RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LINC00311Q8N616 119 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 SETD6Q8TBK2 473 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 TOMM40LQ969M1 308 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 CYYR1Q96J86 154 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 CMSS1Q9BQ75 279 aaKnown RBP12.11□□□□□ -0.47
UPF1-202ENST00000594243 OCSTAMPQ9BR26 566 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 C12orf4Q9NQ89 552 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 OR2S2Q9NQN1 319 aa12.11□□□□□ -0.47
UPF1-202ENST00000594243 A0A1W2PPE3 182 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 RAB27BO00194 218 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 TSPAN9O75954 239 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 SCGNO76038 276 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 CLEC2LP0C7M8 214 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 MDKP21741 143 aaPredicted RBP12.1□□□□□ -0.47
UPF1-202ENST00000594243 IL3RAP26951 378 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 RELBQ01201 579 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 HMGN3Q15651 99 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 MORN2Q502X0 79 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 IDNKQ5T6J7 187 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 OR13F1Q8NGS4 319 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 TAF15Q92804 592 aaKnown RBP eCLIP12.1□□□□□ -0.47
UPF1-202ENST00000594243 FUNDC2Q9BWH2 189 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 MRPS26Q9BYN8 205 aaKnown RBP12.1□□□□□ -0.47
UPF1-202ENST00000594243 JPT1Q9UK76 154 aa12.1□□□□□ -0.47
UPF1-202ENST00000594243 CLPSL1A2RUU4 121 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 A6NDX4 124 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 YPEL1O60688 119 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 RGS11O94810 467 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 GAPDHP04406 335 aaKnown RBP12.09□□□□□ -0.47
UPF1-202ENST00000594243 LPLP06858 475 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 CD3GP09693 182 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 SNRPBP14678 240 aaKnown RBP12.09□□□□□ -0.47
UPF1-202ENST00000594243 LSM3P62310 102 aaKnown RBP12.09□□□□□ -0.47
UPF1-202ENST00000594243 MOGAT2Q3SYC2 334 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 LY6G6FQ5SQ64 297 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 Q6ZSV7 163 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 SLC25A48Q6ZT89 311 aaKnown RBP12.09□□□□□ -0.47
UPF1-202ENST00000594243 OR10V1Q8NGI7 309 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 YPEL2Q96QA6 119 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 C16orf95Q9H693 158 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 Q9N2K0 584 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 ETV7Q9Y603 341 aa12.09□□□□□ -0.47
UPF1-202ENST00000594243 SERPINE3A8MV23 424 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 FAM106CPP0CH98 169 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 SMIM18P0DKX4 95 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 HIST1H1DP16402 221 aaKnown RBP12.08□□□□□ -0.48
UPF1-202ENST00000594243 GNB3P16520 340 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 OLFML2AQ68BL7 652 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 CCBE1Q6UXH8 406 aaPredicted RBP12.08□□□□□ -0.48
UPF1-202ENST00000594243 THNSL2Q86YJ6 484 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 OR8H3Q8N146 312 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 ZNF439Q8NDP4 499 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 OR52L2PQ8NGH6 319 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 LINC01006Q8NI28 216 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 IL1F10Q8WWZ1 152 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 PHF21AQ96BD5 680 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 HDHD3Q9BSH5 251 aaPredicted RBP12.08□□□□□ -0.48
UPF1-202ENST00000594243 ZNF747Q9BV97 191 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 NPFFR1Q9GZQ6 430 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 RANBP3Q9H6Z4 567 aaPredicted RBP12.08□□□□□ -0.48
UPF1-202ENST00000594243 KCNK7Q9Y2U2 307 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 RNF114Q9Y508 228 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 KIAA2026Q5HYC2 2103 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 NBEAL1Q6ZS30 2694 aa12.08□□□□□ -0.48
UPF1-202ENST00000594243 A0A075B6Q4 140 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 MFNGO00587 321 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 HSD17B6O14756 317 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 TGFBR1P36897 503 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 TALDO1P37837 337 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 RPS19P39019 145 aaKnown RBP12.07□□□□□ -0.48
UPF1-202ENST00000594243 KIR2DS4P43632 304 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 ZNF134P52741 427 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 HLA-DRB3P79483 266 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 ZNF816Q0VGE8 651 aaPredicted RBP12.07□□□□□ -0.48
UPF1-202ENST00000594243 ARFRP1Q13795 201 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 CT45A1Q5HYN5 189 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 FAM53AQ6NSI3 398 aaPredicted RBP12.07□□□□□ -0.48
UPF1-202ENST00000594243 C16orf82Q7Z2V1 217 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 TMEM219Q86XT9 240 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 OR4C13Q8NGP0 309 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 CT45A3Q8NHU0 189 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 LGALS14Q8TCE9 139 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 CAPSLQ8WWF8 208 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 AKR1E2Q96JD6 320 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 SPATA2Q9UM82 520 aa12.07□□□□□ -0.48
UPF1-202ENST00000594243 TRDCB7Z8K6 153 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 TXNL1O43396 289 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 CHST1O43916 411 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 ZBTB25P24278 435 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 CD24P25063 80 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 DIAPH2-AS1Q14236 149 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 CDNFQ49AH0 187 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 SHISA2Q6UWI4 295 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 Q6ZPA2 131 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 C5orf24Q7Z6I8 188 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 ABHD14AQ9BUJ0 271 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.06□□□□□ -0.48
UPF1-202ENST00000594243 RHBDL2Q9NX52 303 aa12.06□□□□□ -0.48
UPF1-202ENST00000594243 IGHV1-3A0A0C4DH29 117 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 A0A1W2PPI3 338 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms