RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 PHF21AQ96BD5 680 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 RBM14Q96PK6 669 aaKnown RBP8.74□□□□□ -1.01
CLIP3-203ENST00000586457 SULT4A1Q9BR01 284 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 NICN1Q9BSH3 213 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 TM2D1Q9BX74 207 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 FBN3Q75N90 2809 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 SNRNP70P08621 437 aaKnown RBP8.73□□□□□ -1.01
CLIP3-203ENST00000586457 CSF1P09603 554 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 CD3GP09693 182 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 EFNB2P52799 333 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 HTD2P86397 168 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 UNC119Q13432 240 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 HABP2Q14520 560 aaPredicted RBP8.73□□□□□ -1.01
CLIP3-203ENST00000586457 NEDD8Q15843 81 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 SSX1Q16384 188 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 STEAP3Q658P3 488 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 SIGIRRQ6IA17 410 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 MOB1BQ7L9L4 216 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 LINC00311Q8N616 119 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 C11orf44Q8N8P7 122 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 OR2AK2Q8NG84 335 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 OR2T10Q8NGZ9 312 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 MRPL30Q8TCC3 161 aaKnown RBP8.73□□□□□ -1.01
CLIP3-203ENST00000586457 CMSS1Q9BQ75 279 aaKnown RBP8.73□□□□□ -1.01
CLIP3-203ENST00000586457 LPAR5Q9H1C0 372 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 KCNK15Q9H427 330 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 JPT1Q9UK76 154 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 STUB1Q9UNE7 303 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 MOB4Q9Y3A3 225 aa8.73□□□□□ -1.01
CLIP3-203ENST00000586457 A0A075B6Q4 140 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 IGHV1-3A0A0C4DH29 117 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 LOC100506127A0A0U1RQW1 187 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 IFITM5A6NNB3 132 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 SOCS1O15524 211 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 FBXO24O75426 580 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 IGKV1D-33P01593 117 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 IGKV1-33P01594 117 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 LOXL3P58215 753 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 QRFPP83859 136 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 ZNF816Q0VGE8 651 aaPredicted RBP8.72□□□□□ -1.01
CLIP3-203ENST00000586457 MORN2Q502X0 79 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 TPRA1Q86W33 373 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 GAPTQ8N292 157 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 OR52L2PQ8NGH6 319 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 RAB3CQ96E17 227 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 KCTD7Q96MP8 289 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 S1PR3Q99500 378 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 ATG5Q9H1Y0 275 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 ZNF702PQ9H963 129 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 C12orf4Q9NQ89 552 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 MBNL3Q9NUK0 354 aaKnown RBP8.72□□□□□ -1.01
CLIP3-203ENST00000586457 TXNL4BQ9NX01 149 aaKnown RBP8.72□□□□□ -1.01
CLIP3-203ENST00000586457 AK3Q9UIJ7 227 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 HSF4Q9ULV5 492 aa8.72□□□□□ -1.01
CLIP3-203ENST00000586457 A0A087WXM4 84 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 TMEM272A0A1B0GTI8 110 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 YPEL1O60688 119 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 TNFAIP8O95379 198 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 CD37P11049 281 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 ZBTB25P24278 435 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 FGF9P31371 208 aaPredicted RBP8.71□□□□□ -1.02
CLIP3-203ENST00000586457 PPP1CCP36873 323 aaKnown RBP8.71□□□□□ -1.02
CLIP3-203ENST00000586457 OR10A3P58181 314 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 ARFRP1Q13795 201 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 ARL6IP1Q15041 203 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 NSUN5P1Q3KNT7 163 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 TIMM50Q3ZCQ8 353 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 KCTD21Q4G0X4 260 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 UTF1Q5T230 341 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 CD200R1LQ6Q8B3 271 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 SLC25A48Q6ZT89 311 aaKnown RBP8.71□□□□□ -1.02
CLIP3-203ENST00000586457 FAM89BQ8N5H3 189 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 OR5AU1Q8NGC0 362 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 FAM110DQ8TAY7 271 aaPredicted RBP8.71□□□□□ -1.02
CLIP3-203ENST00000586457 RTN4IP1Q8WWV3 396 aaPredicted RBP8.71□□□□□ -1.02
CLIP3-203ENST00000586457 ARHGAP5-AS1Q96IT6 56 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 YPEL2Q96QA6 119 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 GFI1Q99684 422 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 RASL11BQ9BPW5 248 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 CHCHD6Q9BRQ6 235 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 CENPOQ9BU64 300 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 ABHD14AQ9BUJ0 271 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 PECRQ9BY49 303 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 MMP27Q9H306 513 aa8.71□□□□□ -1.02
CLIP3-203ENST00000586457 IGHV3-72A0A0B4J1Y9 119 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 A0A1W2PPI3 338 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 NOTOA8MTQ0 251 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 SERPINE3A8MV23 424 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 MOSP00540 346 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 CD36P16671 472 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 RAB6AP20340 208 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 CD1BP29016 333 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 CEACAM6P40199 344 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 KRTAP10-3P60369 221 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 SLC35B1P78383 322 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 DIAPH2-AS1Q14236 149 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 CT45A1Q5HYN5 189 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 FOXRED2Q8IWF2 684 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 Q8N2B8 174 aa8.7□□□□□ -1.02
CLIP3-203ENST00000586457 TSPAN14Q8NG11 270 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms