RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 LINC00299Q6ZSB3 139 aa14.8□□□□□ -0.04
CCDC40-213ENST00000574933 SNX29P2Q8IUI4 249 aa14.8□□□□□ -0.04
CCDC40-213ENST00000574933 ABHD12Q8N2K0 398 aa14.8□□□□□ -0.04
CCDC40-213ENST00000574933 LINC00311Q8N616 119 aa14.8□□□□□ -0.04
CCDC40-213ENST00000574933 BEND2Q8NDZ0 799 aa14.8□□□□□ -0.04
CCDC40-213ENST00000574933 OR9G1Q8NH87 305 aa14.8□□□□□ -0.04
CCDC40-213ENST00000574933 SETD2Q9BYW2 2564 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-213ENST00000574933 IGKV1-6A0A0C4DH72 117 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 NPFFO15130 113 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 YPEL1O60688 119 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 GSTT2P0CG29 244 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 GSTT2BP0CG30 244 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 COX7A1P24310 79 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 HERPUD1Q15011 391 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 MORN2Q502X0 79 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 NIPBLQ6KC79 2804 aaeCLIP14.79□□□□□ -0.04
CCDC40-213ENST00000574933 PRR18Q8N4B5 295 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 PIP4P2Q8N4L2 257 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 ZNF439Q8NDP4 499 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 MAFIPQ8WZ33 124 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 GCDHQ92947 438 aaPredicted RBP14.79□□□□□ -0.04
CCDC40-213ENST00000574933 YPEL2Q96QA6 119 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 ST6GALNAC5Q9BVH7 336 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 OR2S2Q9NQN1 319 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 PTTG2Q9NZH5 202 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 ZNF69Q9UC07 566 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 ANXA10Q9UJ72 324 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 PSG11Q9UQ72 335 aa14.79□□□□□ -0.04
CCDC40-213ENST00000574933 TBL2Q9Y4P3 447 aaKnown RBP14.79□□□□□ -0.04
CCDC40-213ENST00000574933 J3QR06 171 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 ITGB1BP1O14713 200 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 RGS11O94810 467 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 SRD5A1P18405 259 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 EPHA1P21709 976 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 PRRX1P54821 245 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 SCGB2A2Q13296 93 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 LTC4SQ16873 150 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 BRD3OSQ6XYD6 125 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 PDZD9Q8IXQ8 264 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 GVQW1Q8N7I0 195 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 BEST4Q8NFU0 473 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 AJUBAQ96IF1 538 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 PRDM13Q9H4Q3 707 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 GNG12Q9UBI6 72 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 V9GYH0 126 aa14.78□□□□□ -0.04
CCDC40-213ENST00000574933 IGHV3OR16-10A0A075B7F0 116 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 TRBV6-7A0A0A0MS04 114 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 IGHV3-43A0A0B4J1X8 118 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 FABP12A6NFH5 140 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 GABARAPH6UMI1 98 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 CTXN2P0C2S0 81 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 FAM157CP0CG43 387 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 IGHV3-43DP0DP04 118 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 ZBTB25P24278 435 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 SSBP1Q04837 148 aaKnown RBP14.77□□□□□ -0.05
CCDC40-213ENST00000574933 IL18Q14116 193 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 HLA-DRB5Q30154 266 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 MINOS1Q5TGZ0 78 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 RUSC1-AS1Q66K80 236 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 FAM53AQ6NSI3 398 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-213ENST00000574933 SLC25A48Q6ZT89 311 aaKnown RBP14.77□□□□□ -0.05
CCDC40-213ENST00000574933 OR52L2PQ8NGH6 319 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 OR4P4Q8NGL7 312 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 SMIM4Q8WVI0 70 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 IL1F10Q8WWZ1 152 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 SNAPC3Q92966 411 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 MS4A7Q9GZW8 240 aaPredicted RBP14.77□□□□□ -0.05
CCDC40-213ENST00000574933 MINOS1-NBL1R4GNA1 71 aa14.77□□□□□ -0.05
CCDC40-213ENST00000574933 FAM172BPA6NC97 362 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 GSTZ1O43708 216 aaPredicted RBP14.76□□□□□ -0.05
CCDC40-213ENST00000574933 ARG1P05089 322 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 SAA4P35542 130 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 PPP1CCP36873 323 aaKnown RBP14.76□□□□□ -0.05
CCDC40-213ENST00000574933 MADCAM1Q13477 382 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 GNMTQ14749 295 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 IGSF11Q5DX21 431 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 LURAP1LQ8IV03 231 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 OR52I2Q8NH67 350 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 LEAP2Q969E1 77 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 CREB3L1Q96BA8 519 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 MMP28Q9H239 520 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 IFT46Q9NQC8 304 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 MTFP1Q9UDX5 166 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 SLC23A1Q9UHI7 598 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 RBMX2Q9Y388 322 aaKnown RBP14.76□□□□□ -0.05
CCDC40-213ENST00000574933 JMJD1CQ15652 2540 aa14.76□□□□□ -0.05
CCDC40-213ENST00000574933 MEIS3P1A6NDR6 274 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 TOR1AO14656 332 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 RCVRNP35243 200 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 ZNF134P52741 427 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 LGALS4P56470 323 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 CT45A1Q5HYN5 189 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 SPANXN2Q5MJ10 180 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 LDLRAD2Q5SZI1 272 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 FAM131AQ6UXB0 335 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 BCL6BQ8N143 479 aaPredicted RBP14.75□□□□□ -0.05
CCDC40-213ENST00000574933 OR5AP2Q8NGF4 316 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 OR10V1Q8NGI7 309 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 CT45A3Q8NHU0 189 aa14.75□□□□□ -0.05
CCDC40-213ENST00000574933 FAM216AQ8WUB2 273 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms