RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 A0A1W2PRV1 198 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 IGKV1-5P01602 117 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 MAS1LP35410 378 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 ICAM4Q14773 271 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 EIF2S3LQ2VIR3 472 aaKnown RBP19.27■□□□□ 0.68
VPS53-211ENST00000571805 DPPA3Q6W0C5 159 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 P4HA3Q7Z4N8 544 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 Q8IYB0 196 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 PRR18Q8N4B5 295 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 YPEL4Q96NS1 127 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 PPP1R3CQ9UQK1 317 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 WSB1Q9Y6I7 421 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 A0A1W2PPE3 182 aa19.27■□□□□ 0.67
VPS53-211ENST00000571805 PPP1CBP62140 327 aa19.27■□□□□ 0.67
VPS53-211ENST00000571805 TMEM267Q0VDI3 215 aaPredicted RBP19.27■□□□□ 0.67
VPS53-211ENST00000571805 ZNF585BQ52M93 769 aa19.27■□□□□ 0.67
VPS53-211ENST00000571805 CACNG5Q9UF02 275 aa19.27■□□□□ 0.67
VPS53-211ENST00000571805 TRAPPC2LQ9UL33 140 aa19.27■□□□□ 0.67
VPS53-211ENST00000571805 SCAF4O95104 1147 aaKnown RBP19.26■□□□□ 0.67
VPS53-211ENST00000571805 CNOT4O95628 575 aaKnown RBP19.26■□□□□ 0.67
VPS53-211ENST00000571805 ERVS71-1P61550 626 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 RPS23P62266 143 aaKnown RBP19.26■□□□□ 0.67
VPS53-211ENST00000571805 ALKBH6Q3KRA9 238 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 ZNF506Q5JVG8 444 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 MALSU1Q96EH3 234 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 MBNL3Q9NUK0 354 aaKnown RBP19.26■□□□□ 0.67
VPS53-211ENST00000571805 POLDIP2Q9Y2S7 368 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 PGA5P0DJD9 388 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 TLE4Q04727 773 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 ZNF146Q15072 292 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 THNSL2Q86YJ6 484 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 UBALD1Q8TB05 177 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 ZDHHC11Q9H8X9 412 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 WIPI2Q9Y4P8 454 aa19.26■□□□□ 0.67
VPS53-211ENST00000571805 H3BQ15 152 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 UBE2CO00762 179 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 CDIPTO14735 213 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 ACAA1P09110 424 aaPredicted RBP19.25■□□□□ 0.67
VPS53-211ENST00000571805 ZNF766Q5HY98 468 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 CLDND2Q8NHS1 167 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 RNASE11Q8TAA1 199 aaKnown RBP19.25■□□□□ 0.67
VPS53-211ENST00000571805 UNKLQ9H9P5 680 aaKnown RBP19.25■□□□□ 0.67
VPS53-211ENST00000571805 SYNGR2O43760 224 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 HSPB1P04792 205 aaKnown RBP19.25■□□□□ 0.67
VPS53-211ENST00000571805 HES3Q5TGS1 186 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 LOXL4Q96JB6 756 aa19.25■□□□□ 0.67
VPS53-211ENST00000571805 IFNA5P01569 189 aa19.24■□□□□ 0.67
VPS53-211ENST00000571805 FBP1P09467 338 aa19.24■□□□□ 0.67
VPS53-211ENST00000571805 RBMXL1Q96E39 390 aaKnown RBP19.24■□□□□ 0.67
VPS53-211ENST00000571805 IGHV1-2P23083 117 aa19.24■□□□□ 0.67
VPS53-211ENST00000571805 ARL16Q0P5N6 197 aa19.24■□□□□ 0.67
VPS53-211ENST00000571805 GMPPAQ96IJ6 420 aaPredicted RBP19.24■□□□□ 0.67
VPS53-211ENST00000571805 TRAV1-1A0A0B4J248 108 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 NXPH2O95156 264 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 HBE1P02100 147 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 S100A6P06703 90 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 CEACAM6P40199 344 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 IDH3GP51553 393 aaPredicted RBP19.23■□□□□ 0.67
VPS53-211ENST00000571805 ARG2P78540 354 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 MRPL49Q13405 166 aaKnown RBP19.23■□□□□ 0.67
VPS53-211ENST00000571805 ADAM5Q6NVV9 412 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 SLC25A40Q8TBP6 338 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 RAB39BQ96DA2 213 aa19.23■□□□□ 0.67
VPS53-211ENST00000571805 SH2D1BO14796 132 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 OR2C1O95371 312 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 IAPPP10997 89 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 HAPLN4Q86UW8 402 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 DRAM1Q8N682 238 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 CYB561D1Q8N8Q1 229 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 CDH20Q9HBT6 801 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 LIN7CQ9NUP9 197 aaKnown RBP19.22■□□□□ 0.67
VPS53-211ENST00000571805 PSENENQ9NZ42 101 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 RBM7Q9Y580 266 aaKnown RBP19.22■□□□□ 0.67
VPS53-211ENST00000571805 IGHV3-64DA0A0J9YX35 117 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 RAC2P15153 192 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 CD200P41217 278 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 PSG7Q13046 419 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 KCNS2Q9ULS6 477 aa19.22■□□□□ 0.67
VPS53-211ENST00000571805 IQCF6A8MYZ5 107 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 H0YL77 283 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 WDR1O75083 606 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 TMPRSS7Q7RTY8 843 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 ZNF429Q86V71 674 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 ZNF525Q8N782 197 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 MUCL1Q96DR8 90 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 RSG1Q9BU20 258 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 IGHV2-5P01817 119 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 METTL15P1P0C7V9 234 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 ZNF16P17020 682 aaPredicted RBP19.21■□□□□ 0.67
VPS53-211ENST00000571805 RAB2AP61019 212 aa19.21■□□□□ 0.67
VPS53-211ENST00000571805 UBE2NP61088 152 aaKnown RBP19.21■□□□□ 0.67
VPS53-211ENST00000571805 M0R296 226 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 CBR1P16152 277 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 CEBPGP53567 150 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 KHDC3LQ587J8 217 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 SLC25A24Q6NUK1 477 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 HEPN1Q6WQI6 88 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 RPRMQ9NS64 109 aa19.2■□□□□ 0.66
VPS53-211ENST00000571805 METTL1Q9UBP6 276 aaKnown RBP19.2■□□□□ 0.66
VPS53-211ENST00000571805 GRPP07492 148 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms