RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ASPHD1Q5U4P2 390 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 RAB12Q6IQ22 244 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 GLIPR1L1Q6UWM5 242 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 TMPRSS11AQ6ZMR5 421 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 OR1N2Q8NGR9 330 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 MYOZ3Q8TDC0 251 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 GHSRQ92847 366 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 SMIM19Q96E16 107 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 C9orf16Q9BUW7 83 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 SPACA1Q9HBV2 294 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 CLEC2DQ9UHP7 191 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 PEX16Q9Y5Y5 336 aa13.13□□□□□ -0.31
CLN3-211ENST00000564091 TRBV5-5A0A0J9YX44 114 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 A0A1W2PPK0 400 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 DCKP27707 260 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 PPIFP30405 207 aaKnown RBP13.12□□□□□ -0.31
CLN3-211ENST00000564091 LSAMPQ13449 338 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 C6orf183Q5T699 404 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 TMEM65Q6PI78 240 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 JAGN1Q8N5M9 183 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 ZFP41Q8N8Y5 198 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 BANF2Q9H503 90 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 TAF9BQ9HBM6 251 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 OR2S2Q9NQN1 319 aa13.12□□□□□ -0.31
CLN3-211ENST00000564091 MRPS28Q9Y2Q9 187 aaKnown RBP13.12□□□□□ -0.31
CLN3-211ENST00000564091 C3orf84H3BNL1 204 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 I3L521 148 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 LANCL1O43813 399 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 GPX5O75715 221 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 CNTFRP26992 372 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 RPS11P62280 158 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLN3-211ENST00000564091 GNB1P62873 340 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 GPR176Q14439 515 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 GNMTQ14749 295 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 GAPTQ8N292 157 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 ZNF491Q8N8L2 437 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 OR52L2PQ8NGH6 319 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 UBE2E2Q96LR5 201 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 RAB9BQ9NP90 201 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 PARP11Q9NR21 331 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 CKLFQ9UBR5 152 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 ZNF580Q9UK33 172 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 VSIG4Q9Y279 399 aa13.11□□□□□ -0.31
CLN3-211ENST00000564091 UBE2QL1A1L167 161 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 ATP6V0E1O15342 81 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 CHATP28329 748 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 ACTBP60709 375 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 TMEM30BQ3MIR4 351 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 Q499Y3 187 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 MORN2Q502X0 79 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 STEAP3Q658P3 488 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 DMKNQ6E0U4 476 aaPredicted RBP13.1□□□□□ -0.31
CLN3-211ENST00000564091 MRPL20Q9BYC9 149 aaKnown RBP13.1□□□□□ -0.31
CLN3-211ENST00000564091 SELENOIQ9C0D9 397 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 OR51J1Q9H342 316 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 SMAD5-AS1Q9Y6J3 95 aa13.1□□□□□ -0.31
CLN3-211ENST00000564091 IGHV7-81A0A0B4J1V7 117 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 IGLV1-40P01703 118 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 OR8U8P0C7N1 319 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 PPP1CCP36873 323 aaKnown RBP13.09□□□□□ -0.31
CLN3-211ENST00000564091 RAB9AP51151 201 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 ZNF616Q08AN1 781 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 YIF1BQ5BJH7 314 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 AWAT2Q6E213 333 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 SIGIRRQ6IA17 410 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 ODF3L1Q8IXM7 274 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 DCUN1D4Q92564 292 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 MRPS24Q96EL2 167 aaKnown RBP13.09□□□□□ -0.31
CLN3-211ENST00000564091 PGLYRP3Q96LB9 341 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 OR14A2Q96R54 314 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 NABP2Q9BQ15 211 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 ZNF251Q9BRH9 671 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 CHCHD6Q9BRQ6 235 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 ABHD14AQ9BUJ0 271 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 ANKRD60Q9BZ19 345 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 S100A14Q9HCY8 104 aa13.09□□□□□ -0.31
CLN3-211ENST00000564091 DIMT1Q9UNQ2 313 aaKnown RBP13.09□□□□□ -0.31
CLN3-211ENST00000564091 TRBV5-7A0A0A0MS05 114 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 TRAV41A0A0B4J266 112 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 FAM90A10PA6NDY2 464 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 CRTAPO75718 401 aaPredicted RBP13.08□□□□□ -0.32
CLN3-211ENST00000564091 SC5DO75845 299 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 HLA-DRB1P01911 266 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 MAS1P04201 325 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 MGMTP16455 207 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 MYL12AP19105 171 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 FUT3P21217 361 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 BLVRBP30043 206 aaPredicted RBP13.08□□□□□ -0.32
CLN3-211ENST00000564091 OR3A3P47888 321 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 INSL3P51460 131 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 RUNX1Q01196 453 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 TRAT1Q6PIZ9 186 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 SBSPONQ8IVN8 264 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 PQLC1Q8N2U9 271 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 ZNF555Q8NEP9 628 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 RDH12Q96NR8 316 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 ALX4Q9H161 411 aaPredicted RBP13.08□□□□□ -0.32
CLN3-211ENST00000564091 ISYNA1Q9NPH2 558 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 KCNIP1Q9NZI2 227 aa13.08□□□□□ -0.32
CLN3-211ENST00000564091 EXOSC1Q9Y3B2 195 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms