RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 MEGF11A6BM72 1044 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 DEGS1O15121 323 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 OGG1O15527 345 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 ANGPTL7O43827 346 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 KDM4BO94953 1096 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 CD1AP06126 327 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 HKR1P10072 659 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 PAX6P26367 422 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 BDKRB2P30411 391 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 GABRA5P31644 462 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 COMPP49747 757 aaPredicted RBP7.13□□□□□ -1.27
USP3-208ENST00000558285 TPBGQ13641 420 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 ZNF146Q15072 292 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 TRAM1Q15629 374 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 CD200R1LQ6Q8B3 271 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 BAIAP2L2Q6UXY1 529 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 Q6YL49 198 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 LIAT1Q6ZQX7 453 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 C17orf107Q6ZR85 190 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 SVBPQ8N300 66 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 NKAIN3Q8N8D7 197 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 OR51A2Q8NGJ7 313 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 GLYATL2Q8WU03 294 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 TNFAIP8L1Q8WVP5 186 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 SEH1LQ96EE3 360 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 MRPS24Q96EL2 167 aaKnown RBP7.13□□□□□ -1.27
USP3-208ENST00000558285 ZNF488Q96MN9 340 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 ZNF714Q96N38 554 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 PDCD1LG2Q9BQ51 273 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 FGF23Q9GZV9 251 aaPredicted RBP7.13□□□□□ -1.27
USP3-208ENST00000558285 METTL9Q9H1A3 318 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 BEX1Q9HBH7 125 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 SPACA1Q9HBV2 294 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 MTCH1Q9NZJ7 389 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 OR6C3Q9NZP0 311 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 UBE2J1Q9Y385 318 aaPredicted RBP7.13□□□□□ -1.27
USP3-208ENST00000558285 LINC00312Q9Y6C7 94 aa7.13□□□□□ -1.27
USP3-208ENST00000558285 TRDV1A0A1B0GX56 115 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 NUDT19A8MXV4 375 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 HOXA3O43365 443 aaPredicted RBP7.12□□□□□ -1.27
USP3-208ENST00000558285 RGS11O94810 467 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 APOC3P02656 99 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 ZNF728P0DKX0 622 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 RAB3BP20337 219 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 PVALBP20472 110 aaPredicted RBP7.12□□□□□ -1.27
USP3-208ENST00000558285 ZNF93P35789 620 aaPredicted RBP7.12□□□□□ -1.27
USP3-208ENST00000558285 SOX2P48431 317 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 TSPAN5P62079 268 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 IL13RA2Q14627 380 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 DEFB112Q30KQ8 113 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 LBHQ53QV2 105 aaPredicted RBP7.12□□□□□ -1.27
USP3-208ENST00000558285 DMRTC1Q5HYR2 192 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 DHRS7BQ6IAN0 325 aaPredicted RBP7.12□□□□□ -1.27
USP3-208ENST00000558285 LDLRAD3Q86YD5 345 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 CD177Q8N6Q3 437 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 ZDHHC22Q8N966 263 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 ZNF565Q8N9K5 539 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 OR2T35Q8NGX2 323 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 GHSRQ92847 366 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 SIRT7Q9NRC8 400 aa7.12□□□□□ -1.27
USP3-208ENST00000558285 TBL2Q9Y4P3 447 aaKnown RBP7.12□□□□□ -1.27
USP3-208ENST00000558285 KRTAP9-6A0A140TA67 174 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 NUPL2O15504 423 aaKnown RBP7.11□□□□□ -1.27
USP3-208ENST00000558285 SPRY1O43609 319 aaPredicted RBP7.11□□□□□ -1.27
USP3-208ENST00000558285 CLN5O75503 358 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 RLN2P04090 185 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 TCRBP04435 133 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 LPLP06858 475 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 BCL3P20749 454 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 CEACAM3P40198 252 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 RAB5BP61020 215 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 DYRK1AQ13627 763 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 EDDM3AQ14507 147 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 SLC9A3R2Q15599 337 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 OR2G6Q5TZ20 316 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 TMEM200BQ69YZ2 307 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 C11orf88Q6PI97 169 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 SHISA2Q6UWI4 295 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 RTN4RL2Q86UN3 420 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 BCL6BQ8N143 479 aaPredicted RBP7.11□□□□□ -1.27
USP3-208ENST00000558285 OR4D6Q8NGJ1 314 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 SGMS2Q8NHU3 365 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 CLUHP3Q96NS8 147 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 ABCG5Q9H222 651 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 ZFAND3Q9H8U3 227 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 TCF7L1Q9HCS4 588 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 GHRLQ9UBU3 117 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 PITPNC1Q9UKF7 332 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 FOXJ3Q9UPW0 622 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 DMRT1Q9Y5R6 373 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 DOCK11Q5JSL3 2073 aa7.11□□□□□ -1.27
USP3-208ENST00000558285 IGKV1-9A0A0C4DH69 117 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 RAB19A4D1S5 217 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 UBE2CO00762 179 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 HPGDSO60760 199 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 EIF3GO75821 320 aaKnown RBP eCLIP7.1□□□□□ -1.27
USP3-208ENST00000558285 CSN2P05814 226 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 MELTFP08582 738 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 GTF2F2P13984 249 aa7.1□□□□□ -1.27
USP3-208ENST00000558285 FSTP19883 344 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms