RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZNF506Q5JVG8 444 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 OR10D3Q8NH80 312 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 Q9N2K0 584 aa10.52□□□□□ -0.72
LDLR-205ENST00000557933 SPTBN2O15020 2390 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 IGLV3-12A0A075B6K2 115 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 VDAC1P21796 283 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 IDH3GP51553 393 aaPredicted RBP10.52□□□□□ -0.73
LDLR-205ENST00000557933 TAS2R30P59541 319 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 ZNF66Q6ZN08 573 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 C16orf82Q7Z2V1 217 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 HAPLN4Q86UW8 402 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 SCGB1C1Q8TD33 95 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 PILRBQ9UKJ0 227 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 TACC2O95359 2948 aa10.52□□□□□ -0.73
LDLR-205ENST00000557933 MED13Q9UHV7 2174 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 LRRC3CA6NJW4 275 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 SIRPB1O00241 398 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 CRYAAP02489 173 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 HSPB1P04792 205 aaKnown RBP10.51□□□□□ -0.73
LDLR-205ENST00000557933 CELA3AP09093 270 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 BCL2P10415 239 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 CHRNA7P36544 502 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 CEBPDP49716 269 aaPredicted RBP10.51□□□□□ -0.73
LDLR-205ENST00000557933 FUT6P51993 359 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 UBE2G2P60604 165 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 GNB2P62879 340 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 EIF3IQ13347 325 aaKnown RBP10.51□□□□□ -0.73
LDLR-205ENST00000557933 LYSMD4Q5XG99 296 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 OR10V1Q8NGI7 309 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 FUT9Q9Y231 359 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 RNF115Q9Y4L5 304 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 KALRNO60229 2985 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 CLDN34H7C241 214 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 EREGO14944 169 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 IGKV1-39P01597 117 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 AMBPP02760 352 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 IGKV1D-39P04432 117 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 UMODP07911 640 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 CLDN15P56746 228 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 ID3Q02535 119 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 RPS19BP1Q86WX3 136 aaKnown RBP10.51□□□□□ -0.73
LDLR-205ENST00000557933 ZNF664Q8N3J9 261 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 ZNF808Q8N4W9 903 aaPredicted RBP10.51□□□□□ -0.73
LDLR-205ENST00000557933 OR51G1Q8NGK1 321 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 LHX4Q969G2 390 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 HES7Q9BYE0 225 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 XKRY2A2RUG3 117 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 MAP1LC3B2A6NCE7 125 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 TSTD3H0UI37 97 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 IGHV3-13P01766 116 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 IGHV3-7P01780 117 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 OR4C12Q96R67 309 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 GPR87Q9BY21 358 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 MAP1LC3BQ9GZQ8 125 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 PSENENQ9NZ42 101 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 OR14J1Q9UGF5 321 aa10.51□□□□□ -0.73
LDLR-205ENST00000557933 A0A1B0GU03 582 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 PINLYPA6NC86 204 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 RPL36A-HNRNPH2H7BZ11 118 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 DKK1O94907 266 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 PTBP3O95758 552 aaKnown RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 KRASP01116 189 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 OR4A8P0C604 315 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 SSR4P51571 173 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 HIST1H3AP68431 136 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 OR8G1Q15617 311 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 WDR74Q6RFH5 385 aaPredicted RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 GNPNAT1Q96EK6 184 aaPredicted RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 LOXL4Q96JB6 756 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 TMEM56Q96MV1 263 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 HIST1H2AAQ96QV6 131 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 SPIN2AQ99865 258 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 SPIN2BQ9BPZ2 258 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 TMEM56-RWDD3S4R434 201 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 COL5A1P20908 1838 aaPredicted RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 ABCA1O95477 2261 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 EP300Q09472 2414 aaPredicted RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 POLEQ07864 2286 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 C1QTNF9BB2RNN3 333 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 PATE3B3GLJ2 98 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 RBMXL2O75526 392 aaKnown RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 CLDN1O95832 211 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 GZMBP10144 247 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 F2RP25116 425 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 WNT5AP41221 380 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 TGFBR3Q03167 851 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 PMS2P11Q13670 270 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 GCSAMLQ5JQS6 135 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 SPINK14Q6IE38 97 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 CXorf67Q86X51 503 aaPredicted RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 OR5P3Q8WZ94 311 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 GTF3AQ92664 365 aaKnown RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 CBLN4Q9NTU7 201 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 SEMA5BQ9P283 1151 aa10.5□□□□□ -0.73
LDLR-205ENST00000557933 CNOT1A5YKK6 2376 aaKnown RBP10.5□□□□□ -0.73
LDLR-205ENST00000557933 OR6C6A6NF89 314 aa10.49□□□□□ -0.73
LDLR-205ENST00000557933 CA11O75493 328 aa10.49□□□□□ -0.73
LDLR-205ENST00000557933 DSCR4P56555 118 aaPredicted RBP10.49□□□□□ -0.73
LDLR-205ENST00000557933 ARF1P84077 181 aaKnown RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms