RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 TMEM30BQ3MIR4 351 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 ACSM3Q53FZ2 586 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 PDLIM3Q53GG5 364 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-222ENST00000556768 C19orf54Q5BKX5 351 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 C6orf141Q5SZD1 244 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 SYT6Q5T7P8 510 aaPredicted RBP5.86□□□□□ -1.47
SCFD1-222ENST00000556768 RNLSQ5VYX0 342 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 GLT8D1Q68CQ7 371 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 RAB12Q6IQ22 244 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 C16orf54Q6UWD8 224 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 BAIAP2L2Q6UXY1 529 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 ZNF485Q8NCK3 441 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 CCDC107Q8WV48 283 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 NEDD4LQ96PU5 975 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 DERL3Q96Q80 235 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 ETAA1Q9NY74 926 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 GNG12Q9UBI6 72 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 TGP01266 2768 aa5.86□□□□□ -1.47
SCFD1-222ENST00000556768 TCRBV4S1A1TA0A5B7 111 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 NCBP2LA6PVI3 153 aaKnown RBP5.85□□□□□ -1.47
SCFD1-222ENST00000556768 LY6LH3BQJ8 138 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 MT-ND4P03905 459 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 CD28P10747 220 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 MGMTP16455 207 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 TMEM11P17152 192 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 JUNBP17275 347 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-222ENST00000556768 GDNFP39905 211 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 HNF4GQ14541 408 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 LIN54Q6MZP7 749 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 ETV3LQ6ZN32 361 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 ZNF497Q6ZNH5 498 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 MOB3BQ86TA1 216 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 DRAM1Q8N682 238 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 OR56B4Q8NH76 319 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 PLPPR1Q8TBJ4 325 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 UFD1Q92890 307 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 LEAP2Q969E1 77 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 CITED2Q99967 270 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-222ENST00000556768 TMED9Q9BVK6 235 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 CCDC90BQ9GZT6 254 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 MOB4Q9Y3A3 225 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 LRRC42Q9Y546 428 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 CMYA5Q8N3K9 4069 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 TRAV39A0A0B4J263 110 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 ERICH4A6NGS2 130 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 HSD17B6O14756 317 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 TXNL1O43396 289 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 KCNAB3O43448 404 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 ARL6IP5O75915 188 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 SNRNP70P08621 437 aaKnown RBP5.85□□□□□ -1.47
SCFD1-222ENST00000556768 HSMCR30P0CW71 290 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 SRMP19623 302 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 HSPA13P48723 471 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 SLC35B1P78383 322 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 TRAM1Q15629 374 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 Q3ZCU0 254 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 HSD17B12Q53GQ0 312 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 RBM48Q5RL73 367 aaKnown RBP5.85□□□□□ -1.47
SCFD1-222ENST00000556768 CEACAM19Q7Z692 300 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 C8orf31Q8N9H6 132 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 KCNG3Q8TAE7 436 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 PHYHIPQ92561 330 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 GON7Q9BXV9 100 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 BANF2Q9H503 90 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 OR2S2Q9NQN1 319 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 BLOC1S6Q9UL45 172 aa5.85□□□□□ -1.47
SCFD1-222ENST00000556768 TSSC4Q9Y5U2 329 aaPredicted RBP5.85□□□□□ -1.47
SCFD1-222ENST00000556768 A0A1W2PP11 408 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 MAGEA13PA6NCF6 341 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 FGF16O43320 207 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 RGS11O94810 467 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 PSMA1P25786 263 aaKnown RBP5.84□□□□□ -1.47
SCFD1-222ENST00000556768 PSMD7P51665 324 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 NKAPLQ5M9Q1 402 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 ZNF554Q86TJ5 538 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 WFDC3Q8IUB2 231 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 FOXRED2Q8IWF2 684 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 LYG1Q8N1E2 194 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 OR2T10Q8NGZ9 312 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 OR4K15Q8NH41 348 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 CHPT1Q8WUD6 406 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 FAM46BQ96A09 425 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 GALMQ96C23 342 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 C1orf43Q9BWL3 253 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 FKBP14Q9NWM8 211 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 ABRACLQ9P1F3 81 aa5.84□□□□□ -1.47
SCFD1-222ENST00000556768 RCC2Q9P258 522 aaKnown RBP5.84□□□□□ -1.47
SCFD1-222ENST00000556768 IGHV1-3A0A0C4DH29 117 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 A0A1W2PPE3 182 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 A0A1W2PRX2 142 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 UBE2QL1A1L167 161 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 PSMB11A5LHX3 300 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 FAM90A9PA6NNJ1 464 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 SERPINE3A8MV23 424 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 C15orf65H3BRN8 121 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 RGS10O43665 173 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 PDCD6O75340 191 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 IGKV1D-33P01593 117 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 IGKV1-33P01594 117 aa5.83□□□□□ -1.48
SCFD1-222ENST00000556768 HBZP02008 142 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms