RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 S1PR3Q99500 378 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 S100A13Q99584 98 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 C9orf16Q9BUW7 83 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 SPACA1Q9HBV2 294 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 AMBNQ9NP70 447 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 RAB9BQ9NP90 201 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 PLSCR3Q9NRY6 295 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 ZNF581Q9P0T4 197 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 ING4Q9UNL4 249 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 LSM4Q9Y4Z0 139 aaKnown RBP5.97□□□□□ -1.45
NEK3-201ENST00000550331 STARD9Q9P2P6 4700 aa5.97□□□□□ -1.45
NEK3-201ENST00000550331 DSCAML1Q8TD84 2053 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 LOC100130705A0A1B0GUX0 176 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 AIPO00170 330 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 CA11O75493 328 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 MT-ND4P03905 459 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 IGF1P05019 195 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 DCKP27707 260 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 PSMB8P28062 276 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 BDKRB2P30411 391 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 SOX6P35712 828 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 LUMP51884 338 aaPredicted RBP5.96□□□□□ -1.46
NEK3-201ENST00000550331 RIPK1Q13546 671 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 GPR176Q14439 515 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 DEFB136Q30KP8 78 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 ATAD3CQ5T2N8 411 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 C6orf183Q5T699 404 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 STEAP3Q658P3 488 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 XAF1Q6GPH4 301 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 TRAT1Q6PIZ9 186 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 TMPRSS11AQ6ZMR5 421 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 ZNF497Q6ZNH5 498 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 SLC25A48Q6ZT89 311 aaKnown RBP5.96□□□□□ -1.46
NEK3-201ENST00000550331 C10orf67Q8IYJ2 551 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 GAPTQ8N292 157 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 MYOZ3Q8TDC0 251 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 NEK7Q8TDX7 302 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 C4orf3Q8WVX3 66 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 APH1BQ8WW43 257 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 SMIM19Q96E16 107 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 MRPS24Q96EL2 167 aaKnown RBP5.96□□□□□ -1.46
NEK3-201ENST00000550331 RASL11BQ9BPW5 248 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 CHCHD6Q9BRQ6 235 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 FGF20Q9NP95 211 aaPredicted RBP5.96□□□□□ -1.46
NEK3-201ENST00000550331 RCC2Q9P258 522 aaKnown RBP5.96□□□□□ -1.46
NEK3-201ENST00000550331 GNG12Q9UBI6 72 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 CKLFQ9UBR5 152 aa5.96□□□□□ -1.46
NEK3-201ENST00000550331 IGHV3-43A0A0B4J1X8 118 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 A0A1W2PP11 408 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 IRGMA1A4Y4 181 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 ZNF736B4DX44 427 aaPredicted RBP5.95□□□□□ -1.46
NEK3-201ENST00000550331 SEC14L6B5MCN3 397 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 C12orf77C9JDV5 145 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 MCRIP1C9JLW8 97 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 NPIPB6E9PJ23 425 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 OGG1O15527 345 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 SPINT2O43291 252 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 GPX5O75715 221 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 SC5DO75845 299 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 IGHV3-43DP0DP04 118 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 IGFBP3P17936 291 aaPredicted RBP5.95□□□□□ -1.46
NEK3-201ENST00000550331 ECI1P42126 302 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 INSL3P51460 131 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 KRTAP10-2P60368 255 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 SLC22A6Q4U2R8 563 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 YIF1BQ5BJH7 314 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 CASC10Q5T4H9 136 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 ZNF554Q86TJ5 538 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 UBALD1Q8TB05 177 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 CCDC107Q8WV48 283 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 KCTD7Q96MP8 289 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 ZNF184Q99676 751 aaPredicted RBP5.95□□□□□ -1.46
NEK3-201ENST00000550331 HSPB9Q9BQS6 159 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 CHCHD3Q9NX63 227 aaKnown RBP5.95□□□□□ -1.46
NEK3-201ENST00000550331 BABAM2Q9NXR7 383 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 GAR1Q9NY12 217 aaKnown RBP5.95□□□□□ -1.46
NEK3-201ENST00000550331 ZNF107Q9UII5 783 aaPredicted RBP5.95□□□□□ -1.46
NEK3-201ENST00000550331 SCOCQ9UIL1 159 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 TRAPPC2LQ9UL33 140 aa5.95□□□□□ -1.46
NEK3-201ENST00000550331 CSMD3Q7Z407 3707 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 TRBV5-5A0A0J9YX44 114 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 FAM90A10PA6NDY2 464 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 FAM90A7PA6NKC0 464 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 FAM90A23PA8MXZ1 464 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 SLC31A2O15432 143 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 LANCL1O43813 399 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 WBP4O75554 376 aaKnown RBP5.94□□□□□ -1.46
NEK3-201ENST00000550331 HBZP02008 142 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 GLAP06280 429 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 OR8U8P0C7N1 319 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 MYL12AP19105 171 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 CHATP28329 748 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 VHLP40337 213 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 ETV1P50549 477 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 ZNF134P52741 427 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 F2RL1P55085 397 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 RUNX1Q01196 453 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 LSAMPQ13449 338 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 Q499Y3 187 aa5.94□□□□□ -1.46
NEK3-201ENST00000550331 CT45A1Q5HYN5 189 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms