RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 UNQ9370/PRO34162Q6UXP9 181 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 C5orf24Q7Z6I8 188 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 LRRTM1Q86UE6 522 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 Q8N6K4 173 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 Q8N9W7 124 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 CT45A3Q8NHU0 189 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 OR2S2Q9NQN1 319 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 SCN3BQ9NY72 215 aa12.9□□□□□ -0.34
VPS29-207ENST00000549970 MOSP00540 346 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 UBBP0CG47 229 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 ZNF137PP52743 207 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 RPL23AP62750 156 aaKnown RBP12.89□□□□□ -0.35
VPS29-207ENST00000549970 SLC35B1P78383 322 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 GNMTQ14749 295 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 SPHARQ15513 63 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 GLT8D1Q68CQ7 371 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 C18orf65Q6ZTR6 163 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 STPG2Q8N412 459 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 MRPL30Q8TCC3 161 aaKnown RBP12.89□□□□□ -0.35
VPS29-207ENST00000549970 RCC1LQ96I51 464 aaKnown RBP12.89□□□□□ -0.35
VPS29-207ENST00000549970 KCNK15Q9H427 330 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 MBNL3Q9NUK0 354 aaKnown RBP12.89□□□□□ -0.35
VPS29-207ENST00000549970 LIN7CQ9NUP9 197 aaKnown RBP12.89□□□□□ -0.35
VPS29-207ENST00000549970 KCNIP1Q9NZI2 227 aa12.89□□□□□ -0.35
VPS29-207ENST00000549970 LSM2Q9Y333 95 aaKnown RBP12.89□□□□□ -0.35
VPS29-207ENST00000549970 NUDT19A8MXV4 375 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 TXNL1O43396 289 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 VSIG8P0DPA2 414 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 GPR12P47775 334 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 MORN2Q502X0 79 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 HSD17B12Q53GQ0 312 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 LIPKQ5VXJ0 399 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 OR2W3Q7Z3T1 314 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 CEACAM19Q7Z692 300 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 OR51D1Q8NGF3 324 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 OR52L2PQ8NGH6 319 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 NRG4Q8WWG1 115 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 PHYHIPQ92561 330 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 NEDD4LQ96PU5 975 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 S1PR3Q99500 378 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 SULT4A1Q9BR01 284 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 TMEM59Q9BXS4 323 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 ABCG5Q9H222 651 aa12.88□□□□□ -0.35
VPS29-207ENST00000549970 AP4M1O00189 453 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 SRMP19623 302 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 CHATP28329 748 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 PPP1CCP36873 323 aaKnown RBP12.87□□□□□ -0.35
VPS29-207ENST00000549970 RPS27AP62979 156 aaKnown RBP12.87□□□□□ -0.35
VPS29-207ENST00000549970 C1orf100Q5SVJ3 147 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 ETV3LQ6ZN32 361 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 C8orf86Q6ZUL3 223 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 LINC00482Q8N8I6 264 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 KLHL30-AS1Q8NEE0 82 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 UFD1Q92890 307 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 TMEM203Q969S6 136 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 RASL11BQ9BPW5 248 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 ABHD14AQ9BUJ0 271 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 PLSCR3Q9NRY6 295 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 ZFP57Q9NU63 452 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 JPT1Q9UK76 154 aa12.87□□□□□ -0.35
VPS29-207ENST00000549970 HSMCR30P0CW71 290 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 HTR2CP28335 458 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 THBS3P49746 956 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 F2RL1P55085 397 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 UNC119Q13432 240 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 LSAMPQ13449 338 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 IRF3Q14653 427 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 STEAP3Q658P3 488 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 C6orf201Q7Z4U5 140 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 ZNF554Q86TJ5 538 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 MRPL41Q8IXM3 137 aaKnown RBP12.86□□□□□ -0.35
VPS29-207ENST00000549970 COMMD1Q8N668 190 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 NICN1Q9BSH3 213 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 FAAP24Q9BTP7 215 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 TPRKBQ9Y3C4 175 aa12.86□□□□□ -0.35
VPS29-207ENST00000549970 LANCL1O43813 399 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 DUS4LO95620 317 aaKnown RBP12.85□□□□□ -0.35
VPS29-207ENST00000549970 UCHL1P09936 223 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 HTD2P86397 168 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 TEX38Q6PEX7 206 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 FAM71E2Q8N5Q1 922 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 OR8H1Q8NGG4 311 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 KCNG3Q8TAE7 436 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 GALMQ96C23 342 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 HSPB9Q9BQS6 159 aa12.85□□□□□ -0.35
VPS29-207ENST00000549970 CHMP1AQ9HD42 196 aaPredicted RBP12.85□□□□□ -0.35
VPS29-207ENST00000549970 TMEM14DPA8MWL7 114 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 SLC22A1O15245 554 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 RRP9O43818 475 aaKnown RBP12.84□□□□□ -0.35
VPS29-207ENST00000549970 YPEL1O60688 119 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 RGS11O94810 467 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 SLC2A2P11168 524 aaPredicted RBP12.84□□□□□ -0.35
VPS29-207ENST00000549970 MYF6P23409 242 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 HOXD3P31249 432 aaPredicted RBP12.84□□□□□ -0.35
VPS29-207ENST00000549970 SOX6P35712 828 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 RPS25P62851 125 aaKnown RBP12.84□□□□□ -0.35
VPS29-207ENST00000549970 P2RY14Q15391 338 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 MMDQ15546 238 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 HMGN3Q15651 99 aa12.84□□□□□ -0.35
VPS29-207ENST00000549970 PNLIPRP3Q17RR3 467 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms