RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	RAB9B	Q9NP90	201 aa		13.65	□□□□□ -0.22
CHMP1A-205	ENST00000548650	CNOT2	Q9NZN8	540 aa	Known RBP	13.65	□□□□□ -0.22
CHMP1A-205	ENST00000548650	PEX16	Q9Y5Y5	336 aa		13.65	□□□□□ -0.22
CHMP1A-205	ENST00000548650	KMT2C	Q8NEZ4	4911 aa	Known RBP	13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	EFCAB10	A6NFE3	127 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	LSAMP	Q13449	338 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FOXE3	Q13461	319 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GPR50	Q13585	617 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GNMT	Q14749	295 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	PNLIPRP3	Q17RR3	467 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	DEFB136	Q30KP8	78 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	AHSA2	Q719I0	299 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	DHRSX	Q8N5I4	330 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FBLIM1	Q8WUP2	373 aa		13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MBNL3	Q9NUK0	354 aa	Known RBP	13.64	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CCL24	O00175	119 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MYL12B	O14950	172 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	LANCL1	O43813	399 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	RRP9	O43818	475 aa	Known RBP	13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CRTAP	O75718	401 aa	Predicted RBP	13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CD1A	P06126	327 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CEL	P19835	753 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CAPG	P40121	348 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	F2RL1	P55085	397 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	WNT4	P56705	351 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	RCN1	Q15293	331 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	DEFB121	Q5J5C9	76 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CXorf66	Q5JRM2	361 aa	Predicted RBP	13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	C6orf141	Q5SZD1	244 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	OR8U1	Q8NH10	309 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MRPL30	Q8TCC3	161 aa	Known RBP	13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	TFAP2C	Q92754	450 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FAM46B	Q96A09	425 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	RASL11B	Q9BPW5	248 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GON7	Q9BXV9	100 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	DCLRE1B	Q9H816	532 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	TAF9B	Q9HBM6	251 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	PSORS1C1	Q9UIG5	152 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ZNF580	Q9UK33	172 aa		13.63	□□□□□ -0.23
CHMP1A-205	ENST00000548650	UBE2QL1	A1L167	161 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	PDCD6	O75340	191 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	IGHG4	P01861	327 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GLA	P06280	429 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ELANE	P08246	267 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FUT3	P21217	361 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	SOX6	P35712	828 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	STEAP3	Q658P3	488 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ZNF554	Q86TJ5	538 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	C8orf59	Q8N0T1	100 aa	Predicted RBP	13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	THRSP	Q92748	146 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	B9D2	Q9BPU9	175 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	UQCC2	Q9BRT2	126 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ABHD14A	Q9BUJ0	271 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	OR2S2	Q9NQN1	319 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FKBP14	Q9NWM8	211 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	JPT1	Q9UK76	154 aa		13.62	□□□□□ -0.23
CHMP1A-205	ENST00000548650	IGF1	P05019	195 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MAPK3	P27361	379 aa	Predicted RBP	13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CDX1	P47902	265 aa	Predicted RBP	13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	LUM	P51884	338 aa	Predicted RBP	13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	RAB25	P57735	213 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GABPB1	Q06547	395 aa	Predicted RBP	13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MORN2	Q502X0	79 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	C5orf24	Q7Z6I8	188 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ODF3L1	Q8IXM7	274 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	PLCXD1	Q9NUJ7	323 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	NBEAL2	Q6ZNJ1	2754 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	TENM3	Q9P273	2699 aa		13.61	□□□□□ -0.23
CHMP1A-205	ENST00000548650	SLC2A2	P11168	524 aa	Predicted RBP	13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	VDAC1	P21796	283 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MYF6	P23409	242 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	PSMB8	P28062	276 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	PPP1CC	P36873	323 aa	Known RBP	13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GP2	P55259	537 aa	Known RBP	13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	DGCR2	P98153	550 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CD69	Q07108	199 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FHL3	Q13643	280 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	INSL4	Q14641	139 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	KIR2DS1	Q14954	304 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MMD	Q15546	238 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	NKAPL	Q5M9Q1	402 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	NANOGP1	Q8N7R0	232 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	OR52L2P	Q8NGH6	319 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MYOZ3	Q8TDC0	251 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	C4orf3	Q8WVX3	66 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	KCTD7	Q96MP8	289 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	MRPL20	Q9BYC9	149 aa	Known RBP	13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CST11	Q9H112	138 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	GHRL	Q9UBU3	117 aa		13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ZNF107	Q9UII5	783 aa	Predicted RBP	13.6	□□□□□ -0.23
CHMP1A-205	ENST00000548650	CHAT	P28329	748 aa		13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	HTD2	P86397	168 aa		13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	DCTN2	Q13561	401 aa	Known RBP	13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	FAM27D1	Q5T7N8	215 aa		13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	OGFRL1	Q5TC84	451 aa	Predicted RBP	13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	SULT4A1	Q9BR01	284 aa		13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	KCNIP1	Q9NZI2	227 aa		13.59	□□□□□ -0.23
CHMP1A-205	ENST00000548650	ERICH4	A6NGS2	130 aa		13.58	□□□□□ -0.24
CHMP1A-205	ENST00000548650	CASQ2	O14958	399 aa	Predicted RBP	13.58	□□□□□ -0.24
CHMP1A-205	ENST00000548650	UBB	P0CG47	229 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms