RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CD40LGP29965 261 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 ACTBP60709 375 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 ACTG1P63261 375 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 MEF2BQ02080 365 aaPredicted RBP1.95□□□□□ -2.1
VPS29-205ENST00000548539 SMAGPQ0VAQ4 97 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 PDGFRLQ15198 375 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 CST6Q15828 149 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 MAPK14Q16539 360 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 RIBC1Q8N443 379 aaPredicted RBP1.95□□□□□ -2.1
VPS29-205ENST00000548539 TMEM75Q8N9X5 138 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 OR10D4PQ8NGN7 298 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 OR5K1Q8NHB7 308 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 DNAJB3Q8WWF6 145 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 RAD51AP1Q96B01 352 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 SMIM12Q96EX1 92 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 RBP7Q96R05 134 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 GTSF1LQ9H1H1 148 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 C11orf49Q9H6J7 331 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 MRPL16Q9NX20 251 aaKnown RBP1.95□□□□□ -2.1
VPS29-205ENST00000548539 TMEM216Q9P0N5 145 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 SHROOM3Q8TF72 1996 aa1.95□□□□□ -2.1
VPS29-205ENST00000548539 DNMT1P26358 1616 aaKnown RBP1.95□□□□□ -2.1
VPS29-205ENST00000548539 NACADO15069 1562 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 IGSF23A1L1A6 192 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 GOLGA6L10A6NI86 522 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 FTCDNL1E5RQL4 147 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 M0QYV0 167 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 CETN3O15182 167 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 CDS2O95674 445 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 OCMP0CE72 109 aaPredicted RBP1.94□□□□□ -2.1
VPS29-205ENST00000548539 COILP38432 576 aaPredicted RBP1.94□□□□□ -2.1
VPS29-205ENST00000548539 PSMB3P49720 205 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 OR8G1Q15617 311 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 EXOC3L4Q17RC7 722 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 C4orf26Q17RF5 130 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 PYCR3Q53H96 274 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 SPATA31B1PQ5VZV4 182 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 OTUD6BQ8N6M0 293 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 OR5L1Q8NGL2 311 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 LLPHQ9BRT6 129 aaKnown RBP1.94□□□□□ -2.1
VPS29-205ENST00000548539 METTL9Q9H1A3 318 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 WDR54Q9H977 334 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 GLS2Q9UI32 602 aa1.94□□□□□ -2.1
VPS29-205ENST00000548539 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.94□□□□□ -2.1
VPS29-205ENST00000548539 PUS1Q9Y606 427 aaKnown RBP eCLIP1.94□□□□□ -2.1
VPS29-205ENST00000548539 NUP153P49790 1475 aaKnown RBP1.94□□□□□ -2.1
VPS29-205ENST00000548539 CLUHO75153 1309 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 ATP8B1O43520 1251 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 YEATS4O95619 227 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 CRYGDP07320 174 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 FBP1P09467 338 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 AGTR1P30556 359 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 PDK2Q15119 407 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 MESTQ5EB52 335 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 SDHAF4Q5VUM1 108 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 STOML3Q8TAV4 291 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 TNFAIP8L1Q8WVP5 186 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 PPCDCQ96CD2 204 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 MED18Q9BUE0 208 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 TAS2R9Q9NYW1 312 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 LINC00527Q9UJ94 153 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 ZSWIM8A7E2V4 1837 aa1.93□□□□□ -2.1
VPS29-205ENST00000548539 LTBP4Q8N2S1 1624 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 C1orf232A0A0U1RR37 186 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 C3orf84H3BNL1 204 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 CCRL2O00421 344 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 TPM3P06753 285 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 TPM4P67936 248 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 TNFRSF9Q07011 255 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 TBC1D28Q2M2D7 210 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 HLA-DRB5Q30154 266 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 SMARCD3Q6STE5 483 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 PLEKHG7Q6ZR37 379 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 TMPPEQ6ZT21 453 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 ZFAND2AQ8N6M9 145 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 OR5C1Q8NGR4 320 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 CD200R1Q8TD46 325 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 ZNF426Q9BUY5 554 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 DNAJC12Q9UKB3 198 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 VPREB3Q9UKI3 123 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 CACNA1DQ01668 2161 aa1.92□□□□□ -2.1
VPS29-205ENST00000548539 LOC102725191A0A1B0GVB3 256 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 A8MWP6 167 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 H3BSA7 217 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 TP53I11O14683 189 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 COCHO43405 550 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 HBZP02008 142 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 OR4A8P0C604 315 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 OR13C7P0DN81 318 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 CD99P14209 185 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 GZMMP51124 257 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 PSG4Q00888 419 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 CLEC12BQ2HXU8 276 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 OR10P1Q8NGE3 313 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 IMP3Q9NV31 184 aaKnown RBP1.91□□□□□ -2.1
VPS29-205ENST00000548539 SNX10Q9Y5X0 201 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 MTCH2Q9Y6C9 303 aa1.91□□□□□ -2.1
VPS29-205ENST00000548539 NUP205Q92621 2012 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 C17orf98A8MV24 154 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 G3V3Q6 166 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms