RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SPANXN2Q5MJ10 180 aa13.96□□□□□ -0.17
LIG1-204ENST00000542460 FAM131AQ6UXB0 335 aa13.96□□□□□ -0.17
LIG1-204ENST00000542460 GVQW1Q8N7I0 195 aa13.96□□□□□ -0.17
LIG1-204ENST00000542460 BEST4Q8NFU0 473 aa13.96□□□□□ -0.17
LIG1-204ENST00000542460 IFT46Q9NQC8 304 aa13.96□□□□□ -0.17
LIG1-204ENST00000542460 JPT1Q9UK76 154 aa13.96□□□□□ -0.17
LIG1-204ENST00000542460 IGHV3-43A0A0B4J1X8 118 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 FAM172BPA6NC97 362 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 MEIS3P1A6NDR6 274 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 DIRAS3O95661 229 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 IGHV3-43DP0DP04 118 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 ZBTB25P24278 435 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 ETV6P41212 452 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 Q3ZCU0 254 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 CHRFAM7AQ494W8 412 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 LINC00299Q6ZSB3 139 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 OR52L2PQ8NGH6 319 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 OR9G1Q8NH87 305 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 FCAMRQ8WWV6 532 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 ANXA10Q9UJ72 324 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 PSG11Q9UQ72 335 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 TOR1AO14656 332 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 CTDSPLO15194 276 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 RGS11O94810 467 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 CTXN2P0C2S0 81 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 PTBP1P26599 531 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIG1-204ENST00000542460 PRRX1P54821 245 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 MIDNQ504T8 468 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 IGSF11Q5DX21 431 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 UTF1Q5T230 341 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 ZNF626Q68DY1 528 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 BRD3OSQ6XYD6 125 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 ZNF596Q8TC21 504 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 CABLES2Q9BTV7 478 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 SLC23A1Q9UHI7 598 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 ANAPC10Q9UM13 185 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 V9GYH0 126 aa13.95□□□□□ -0.18
LIG1-204ENST00000542460 IGKV1-6A0A0C4DH72 117 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 A0A1W2PRD5 423 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 A0A1W2PRF3 423 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 A0A1W2PRM7 423 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 ODF3BA8MYP8 253 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 GABARAPH6UMI1 98 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 NPFFO15130 113 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 HSPA12AO43301 675 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 YPEL1O60688 119 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 IGHV3-7P01780 117 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 ARG1P05089 322 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 SRD5A1P18405 259 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 NAT1P18440 290 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 LGALS4P56470 323 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 SCGB2A2Q13296 93 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 HERPUD1Q15011 391 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 MORN2Q502X0 79 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 PIP4P2Q8N4L2 257 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 C8orf31Q8N9H6 132 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 OR10V1Q8NGI7 309 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 OR52I2Q8NH67 350 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 LEAP2Q969E1 77 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 YPEL2Q96QA6 119 aa13.94□□□□□ -0.18
LIG1-204ENST00000542460 MS4A7Q9GZW8 240 aaPredicted RBP13.94□□□□□ -0.18
LIG1-204ENST00000542460 SONP18583 2426 aaKnown RBP13.93□□□□□ -0.18
LIG1-204ENST00000542460 TRBV6-7A0A0A0MS04 114 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 J3QR06 171 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 BET1O15155 118 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 CRLF1O75462 422 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 RBBP9O75884 186 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 IGLV1-47P01700 117 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 FCER2P06734 321 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 PPP1CCP36873 323 aaKnown RBP13.93□□□□□ -0.18
LIG1-204ENST00000542460 CEACAM6P40199 344 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 ARPC4P59998 168 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 GNMTQ14749 295 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 KRTAP21-3Q3LHN1 58 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 LY6G6FQ5SQ64 297 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 RUSC1-AS1Q66K80 236 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 FAM53AQ6NSI3 398 aaPredicted RBP13.93□□□□□ -0.18
LIG1-204ENST00000542460 C9orf139Q6ZV77 190 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 BEND2Q8NDZ0 799 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 OR10J5Q8NHC4 309 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 SMIM4Q8WVI0 70 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 SNAPC3Q92966 411 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 KLK11Q9UBX7 282 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 ZNF69Q9UC07 566 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 MTFP1Q9UDX5 166 aa13.93□□□□□ -0.18
LIG1-204ENST00000542460 NSD1Q96L73 2696 aaPredicted RBP13.93□□□□□ -0.18
LIG1-204ENST00000542460 EPHA1P21709 976 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 RCVRNP35243 200 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 SAA4P35542 130 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 GNG10P50151 68 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 ACTBP60709 375 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 ACTG1P63261 375 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 DGCR2P98153 550 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 SSBP1Q04837 148 aaKnown RBP13.92□□□□□ -0.18
LIG1-204ENST00000542460 RNASE12Q5GAN4 147 aaKnown RBP13.92□□□□□ -0.18
LIG1-204ENST00000542460 LINC00311Q8N616 119 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 OR5AP2Q8NGF4 316 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 MMP28Q9H239 520 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 OR1A1Q9P1Q5 309 aa13.92□□□□□ -0.18
LIG1-204ENST00000542460 TBL2Q9Y4P3 447 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms