RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 THNSL2Q86YJ6 484 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 SFT2D1Q8WV19 159 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 VSIRQ9H7M9 311 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 RNF122Q9H9V4 155 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 CACFD1Q9UGQ2 172 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 TMED3Q9Y3Q3 217 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 K7EM74 188 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 TAAR5O14804 337 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 MLNRO43193 412 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 IGKV1-39P01597 117 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 IGKV1D-39P04432 117 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 SSTR5P35346 364 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 UCP2P55851 309 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 OR8G2PQ6IF36 304 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 ZNF610Q8N9Z0 462 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 ABHD14BQ96IU4 210 aa14.3□□□□□ -0.12
USP28-208ENST00000540438 ZNF14P17017 642 aaPredicted RBP14.29□□□□□ -0.12
USP28-208ENST00000540438 P2RY1P47900 373 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 EIF3IQ13347 325 aaKnown RBP14.29□□□□□ -0.12
USP28-208ENST00000540438 TMEM178AQ8NBL3 297 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 UBAC2Q8NBM4 344 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 OR2W1Q9Y3N9 320 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 URGCP-MRPS24S4R325 110 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 hCG_1809904A0A1W2PP81 198 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 A0A1W2PPE2 198 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 A0A1W2PR64 198 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 A0A1W2PRV1 198 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 ZNF727A8MUV8 499 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 LINC01387J3KSC0 135 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 CDS2O95674 445 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 BMP5P22003 454 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 F2RP25116 425 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 PEA15Q15121 130 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 SPANXN5Q5MJ07 72 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 ZNF324BQ6AW86 544 aaPredicted RBP14.29□□□□□ -0.12
USP28-208ENST00000540438 Q6P435 159 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 UQCC3Q6UW78 93 aa14.29□□□□□ -0.12
USP28-208ENST00000540438 KIR2DS1A0A191URI9 304 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 TIMM8AO60220 97 aaPredicted RBP14.28□□□□□ -0.12
USP28-208ENST00000540438 RBMXL2O75526 392 aaKnown RBP14.28□□□□□ -0.12
USP28-208ENST00000540438 CD55P08174 381 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 KIR2DS4P43632 304 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 KIR2DS1Q14954 304 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 AWAT1Q58HT5 328 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 BEND4Q6ZU67 534 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 LEAP2Q969E1 77 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 SNAPINO95295 136 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 GLIPR1P48060 266 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 HLA-DRB3P79483 266 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 TESK1Q15569 626 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 UTF1Q5T230 341 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 TAAR6Q96RI8 345 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 YLPM1P49750 1951 aaKnown RBP14.28□□□□□ -0.12
USP28-208ENST00000540438 DANCRP0C864 163 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 SNCAP37840 140 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 ZNF83P51522 516 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 ELLP55199 621 aaPredicted RBP14.28□□□□□ -0.12
USP28-208ENST00000540438 OR2B8PP59922 312 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 EIF5AP63241 154 aaKnown RBP14.28□□□□□ -0.12
USP28-208ENST00000540438 ARL16Q0P5N6 197 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 HFEQ30201 348 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 FAM122CQ6P4D5 195 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 LCN15Q6UWW0 184 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 IL34Q6ZMJ4 242 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 SSX9Q7RTT3 188 aa14.28□□□□□ -0.12
USP28-208ENST00000540438 SPTBN1Q01082 2364 aaKnown RBP14.27□□□□□ -0.12
USP28-208ENST00000540438 KMT2EQ8IZD2 1858 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 A0A1W2PPE3 182 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 A0A1W2PPH5 198 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 UMAD1C9J7I0 102 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 IGLV2-14P01704 120 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 G6PCP35575 357 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 KIR2DL2P43627 348 aaPredicted RBP14.27□□□□□ -0.12
USP28-208ENST00000540438 FAM214BQ7L5A3 538 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 SAT2Q96F10 170 aaPredicted RBP14.27□□□□□ -0.12
USP28-208ENST00000540438 RTL8AQ9BWD3 113 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 SEC11CQ9BY50 192 aa14.27□□□□□ -0.12
USP28-208ENST00000540438 ZNF318Q5VUA4 2279 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 J3QT63 122 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 PTBP3O95758 552 aaKnown RBP14.27□□□□□ -0.13
USP28-208ENST00000540438 SELLP14151 372 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 MPV17LQ2QL34 196 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 NMSQ5H8A3 153 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 FAM24BQ8N5W8 94 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 PARP11Q9NR21 331 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 TNCP24821 2201 aa14.27□□□□□ -0.13
USP28-208ENST00000540438 SOX15O60248 233 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 SS18L1O75177 396 aaPredicted RBP14.26□□□□□ -0.13
USP28-208ENST00000540438 CD5P06127 495 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 VDAC1P21796 283 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 DVL1P1P54792 670 aaPredicted RBP14.26□□□□□ -0.13
USP28-208ENST00000540438 PAX9P55771 341 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 UCP3P55916 312 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 OR2D2Q9H210 308 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 GP6Q9HCN6 339 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 MPC1Q9Y5U8 109 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 IGKV1-5P01602 117 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 HOXC12P31275 282 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 GABRA6Q16445 453 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 NANOS1Q8WY41 292 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms