RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GNG12Q9UBI6 72 aa10.53□□□□□ -0.72
SS18-204ENST00000539244 RPL36Q9Y3U8 105 aaKnown RBP10.53□□□□□ -0.72
SS18-204ENST00000539244 MCRIP1C9JLW8 97 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 G3V318 75 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 ATP6V0E1O15342 81 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 CA11O75493 328 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 GPX5O75715 221 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 SC5DO75845 299 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 HBZP02008 142 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 IGFBP3P17936 291 aaPredicted RBP10.52□□□□□ -0.73
SS18-204ENST00000539244 MYF6P23409 242 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 RAB9AP51151 201 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 RIPK1Q13546 671 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 GPR176Q14439 515 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 SLC22A6Q4U2R8 563 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 MINDY2Q8NBR6 621 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 OR1L1Q8NH94 360 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 DCUN1D4Q92564 292 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 ZNF184Q99676 751 aaPredicted RBP10.52□□□□□ -0.73
SS18-204ENST00000539244 TRAPPC2LQ9UL33 140 aa10.52□□□□□ -0.73
SS18-204ENST00000539244 IGHV7-81A0A0B4J1V7 117 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 H3BNX3 289 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 OVOL1O14753 267 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 OGG1O15527 345 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 CIB2O75838 187 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 CRIP2P52943 208 aaPredicted RBP10.51□□□□□ -0.73
SS18-204ENST00000539244 ACTBP60709 375 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 MORN2Q502X0 79 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 C19orf54Q5BKX5 351 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 ZNF554Q86TJ5 538 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 ODF3L1Q8IXM7 274 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 CBR4Q8N4T8 237 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 NPBQ8NG41 125 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 OR10V1Q8NGI7 309 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 OR4K15Q8NH41 348 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 APH1BQ8WW43 257 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 SMIM19Q96E16 107 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 FGF20Q9NP95 211 aaPredicted RBP10.51□□□□□ -0.73
SS18-204ENST00000539244 MBNL3Q9NUK0 354 aaKnown RBP10.51□□□□□ -0.73
SS18-204ENST00000539244 ETAA1Q9NY74 926 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 WSB1Q9Y6I7 421 aa10.51□□□□□ -0.73
SS18-204ENST00000539244 TRAV41A0A0B4J266 112 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 TRBV5-5A0A0J9YX44 114 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 MAGEA13PA6NCF6 341 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 FAM90A7PA6NKC0 464 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 FAM90A23PA8MXZ1 464 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 NBR2O15453 112 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 NDUFA3O95167 84 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 GLAP06280 429 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 FRMD6-AS1P0C7T7 363 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 GP9P14770 177 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 SPNP16150 400 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 RCC1P18754 421 aaPredicted RBP10.5□□□□□ -0.73
SS18-204ENST00000539244 FSTP19883 344 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 ADARB1P78563 741 aaKnown RBP10.5□□□□□ -0.73
SS18-204ENST00000539244 C5orf64Q2M2E5 130 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 LY6G6FQ5SQ64 297 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 RAB12Q6IQ22 244 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 DLX4Q92988 240 aaPredicted RBP10.5□□□□□ -0.73
SS18-204ENST00000539244 ORAI1Q96D31 301 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 RITA1Q96K30 269 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 RDH12Q96NR8 316 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 CITED4Q96RK1 184 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 NABP2Q9BQ15 211 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 ABHD14AQ9BUJ0 271 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 ANKRD60Q9BZ19 345 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 TOLLIPQ9H0E2 274 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 OR2S2Q9NQN1 319 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 TPSG1Q9NRR2 321 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 JPT1Q9UK76 154 aa10.5□□□□□ -0.73
SS18-204ENST00000539244 CSMD3Q7Z407 3707 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 LOC100130705A0A1B0GUX0 176 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 SAP30O75446 220 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 LYL1P12980 280 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 CNTFRP26992 372 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 DCKP27707 260 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 BLVRBP30043 206 aaPredicted RBP10.49□□□□□ -0.73
SS18-204ENST00000539244 LIN54Q6MZP7 749 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 ZFP1Q6P2D0 407 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 ACSM6Q6P461 480 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 OVCH2Q7RTZ1 564 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 CDH26Q8IXH8 852 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 PRR18Q8N4B5 295 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 OR6Q1Q8NGQ2 317 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 OR5B12Q96R08 314 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 ZNF251Q9BRH9 671 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 MRPL20Q9BYC9 149 aaKnown RBP10.49□□□□□ -0.73
SS18-204ENST00000539244 ZMAT4Q9H898 229 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 TAF9BQ9HBM6 251 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 PARP11Q9NR21 331 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 FAM53CQ9NYF3 392 aa10.49□□□□□ -0.73
SS18-204ENST00000539244 MRPS28Q9Y2Q9 187 aaKnown RBP10.49□□□□□ -0.73
SS18-204ENST00000539244 TRAV8-7A0A075B6U6 113 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 LCE6AA0A183 80 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 LINC01619G3V211 115 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 SOX15O60248 233 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 YPEL1O60688 119 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 LALBAP00709 142 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 LGALS1P09382 135 aaKnown RBP10.48□□□□□ -0.73
SS18-204ENST00000539244 ETV1P50549 477 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms