RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 MUC15Q8N387 334 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 OR5C1Q8NGR4 320 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 OR10A6Q8NH74 314 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 OR2V1Q8NHB1 315 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 DYNC2LI1Q8TCX1 351 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 LMX1AQ8TE12 382 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 TRNT1Q96Q11 434 aaKnown RBP1.27□□□□□ -2.21
CD44-238ENST00000534296 PRSS27Q9BQR3 290 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 ACBD6Q9BR61 282 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 CHST5Q9GZS9 411 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 AICDAQ9GZX7 198 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 OR51E2Q9H255 320 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 TXNL4BQ9NX01 149 aaKnown RBP1.27□□□□□ -2.21
CD44-238ENST00000534296 C1orf109Q9NX04 203 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 PSMD13Q9UNM6 376 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 SAMHD1Q9Y3Z3 626 aaKnown RBP1.27□□□□□ -2.21
CD44-238ENST00000534296 SETXQ7Z333 2677 aaKnown RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 USP9XQ93008 2570 aaPredicted RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 PTPRKQ15262 1439 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 A0A1W2PNM2 257 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 GRIFINA4D1Z8 144 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 C17orf51A8MQB3 221 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 TMEM250H0YL14 139 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 POLR3GO15318 223 aaPredicted RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 SCN2BO60939 215 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ARL6IP5O75915 188 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 LTAP01374 205 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 HBZP02008 142 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 CRYGDP07320 174 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 OCMP0CE72 109 aaPredicted RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 SLC35E2BP0CK96 405 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ZNF22P17026 224 aaPredicted RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 ORM2P19652 201 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ADORA1P30542 326 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 CD200P41217 278 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 PSMD7P51665 324 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 OR2B6P58173 313 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 OR10A3P58181 314 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 C1QTNF8P60827 252 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 PSG4Q00888 419 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 OR8G1Q15617 311 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 SCGB1D4Q6XE38 83 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 FAM19A3Q7Z5A8 133 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 DOLPP1Q86YN1 238 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 Q8NAQ8 132 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 OR10D4PQ8NGN7 298 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ANGPTL6Q8NI99 470 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ERMNQ8TAM6 284 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 RNASEH2CQ8TDP1 164 aaKnown RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 ABHD14BQ96IU4 210 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 C20orf166-AS1Q96NR2 134 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 HBEGFQ99075 208 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 B9D2Q9BPU9 175 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ZNF251Q9BRH9 671 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 ALX4Q9H161 411 aaPredicted RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 GTSF1LQ9H1H1 148 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 SPANXB1Q9NS25 103 aaPredicted RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 LINC00527Q9UJ94 153 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 HSPE1-MOB4S4R3N1 261 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 TRPM6Q9BX84 2022 aa1.26□□□□□ -2.21
CD44-238ENST00000534296 TEP1Q99973 2627 aaKnown RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 DNMT1P26358 1616 aaKnown RBP1.26□□□□□ -2.21
CD44-238ENST00000534296 ATRNO75882 1429 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 KIAA0232Q92628 1395 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 CACNA1SQ13698 1873 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 LTBP2Q14767 1821 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 IGKV1D-37A0A075B6S9 117 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 TRGV4A0A0C4DH28 118 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 LINC00854A0A1B0GVQ3 168 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 IGSF23A1L1A6 192 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 LINC00862A6NCI5 91 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 UBFD1O14562 309 aaKnown RBP1.25□□□□□ -2.21
CD44-238ENST00000534296 COPEO14579 308 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 UBE2L6O14933 153 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 TRAPPC3O43617 180 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 MPZL2O60487 215 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 YEATS4O95619 227 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 CGB3P0DN86 165 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 CGB7P0DN87 165 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 CD99P14209 185 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 SLC25A16P16260 332 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 CRATP43155 626 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 PSMB3P49720 205 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 RWDD2BP57060 319 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 ACTBP60709 375 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 DAD1P61803 113 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 ACTG1P63261 375 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 FAM3AP98173 230 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 DEFA6Q01524 100 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 PMS2P3Q13401 168 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 PDGFRLQ15198 375 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 ZNHIT3Q15649 155 aaPredicted RBP1.25□□□□□ -2.21
CD44-238ENST00000534296 TRMT12Q53H54 448 aaKnown RBP1.25□□□□□ -2.21
CD44-238ENST00000534296 CCDC112Q8NEF3 446 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 OR10P1Q8NGE3 313 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 OR51H1Q8NH63 302 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 MRPS24Q96EL2 167 aaKnown RBP1.25□□□□□ -2.21
CD44-238ENST00000534296 CAPZA3Q96KX2 299 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 RBP7Q96R05 134 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 C1QTNF6Q9BXI9 259 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms