RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ZNF462Q96JM2 2506 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 SETXQ7Z333 2677 aaKnown RBP1.31□□□□□ -2.2
CD44-215ENST00000525241 VPS37CA5D8V6 355 aaPredicted RBP1.31□□□□□ -2.2
CD44-215ENST00000525241 ZNF879B4DU55 563 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 K7EQS6 105 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 M0QX08 132 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 NEMFO60524 1076 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 SOD1P00441 154 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 CCDC172P0C7W6 258 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 CTSEP14091 401 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 NQO1P15559 274 aaKnown RBP1.31□□□□□ -2.2
CD44-215ENST00000525241 MAGEA6P43360 314 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 RWDD2BP57060 319 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 DYNLL1P63167 89 aaKnown RBP1.31□□□□□ -2.2
CD44-215ENST00000525241 TMED1Q13445 227 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 COPS6Q7L5N1 327 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 SPERTQ8NA61 448 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 ZNRF2Q8NHG8 242 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 ANGPTL6Q8NI99 470 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 SMDT1Q9H4I9 107 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 SCML1Q9UN30 329 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 AMMECR1Q9Y4X0 333 aaPredicted RBP1.31□□□□□ -2.2
CD44-215ENST00000525241 ATG2BQ96BY7 2078 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 CACNA1SQ13698 1873 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 NUP153P49790 1475 aaKnown RBP1.31□□□□□ -2.2
CD44-215ENST00000525241 COL6A3P12111 3177 aa1.31□□□□□ -2.2
CD44-215ENST00000525241 CUL9Q8IWT3 2517 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 MAST4O15021 2626 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 TENM1Q9UKZ4 2725 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 ADAMTSL1Q8N6G6 1762 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 A0A0G2JQZ4 141 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 A0A1B0GX12 115 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 IQCF5A8MTL0 148 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 B4DEV8 164 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 IGHV3-30-3P0DP02 117 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 PSMA1P25786 263 aaKnown RBP1.3□□□□□ -2.2
CD44-215ENST00000525241 OR10J3Q5JRS4 329 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 HENMT1Q5T8I9 393 aaKnown RBP1.3□□□□□ -2.2
CD44-215ENST00000525241 VN1R4Q7Z5H5 301 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 TRIML2Q8N7C3 387 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 YIPF7Q8N8F6 280 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 DCANP1Q8TF63 244 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 TMBIM1Q969X1 311 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 ZNF625Q96I27 306 aaPredicted RBP1.3□□□□□ -2.2
CD44-215ENST00000525241 EBNA1BP2Q99848 306 aaKnown RBP1.3□□□□□ -2.2
CD44-215ENST00000525241 C1QTNF6Q9BXI9 259 aa1.3□□□□□ -2.2
CD44-215ENST00000525241 MRM2Q9UI43 246 aaKnown RBP1.3□□□□□ -2.2
CD44-215ENST00000525241 CEP350Q5VT06 3117 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 CDK14O94921 469 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 LDOC1O95751 146 aaPredicted RBP1.29□□□□□ -2.2
CD44-215ENST00000525241 FBP1P09467 338 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 TPM1P09493 284 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 GZMBP10144 247 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 LPAR6P43657 344 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 GABARAPL2P60520 117 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 MRPL51Q4U2R6 128 aaKnown RBP1.29□□□□□ -2.2
CD44-215ENST00000525241 LRRC6Q86X45 466 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 ZBTB8OSQ8IWT0 167 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 OR52B2Q96RD2 323 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 DMAC2Q9NW81 257 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 FBXL3Q9UKT7 428 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 STK38LQ9Y2H1 464 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 GBF1Q92538 1859 aa1.29□□□□□ -2.2
CD44-215ENST00000525241 GPR98Q8WXG9 6306 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 DOCK10Q96BY6 2186 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 H3BSA7 217 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 GPR171O14626 319 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 YKT6O15498 198 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 SGCEO43556 437 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 ATF1P18846 271 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 AKR1C2P52895 323 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 SLAMF1Q13291 335 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 FLOT2Q14254 428 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 LGALS9CQ6DKI2 356 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 GTSF1LQ9H1H1 148 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 OR52A5Q9H2C5 316 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 METTL17Q9H7H0 456 aaPredicted RBP1.28□□□□□ -2.2
CD44-215ENST00000525241 NRBP2Q9NSY0 501 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 TXNL4BQ9NX01 149 aaKnown RBP1.28□□□□□ -2.2
CD44-215ENST00000525241 ENPP5Q9UJA9 477 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 PIK3R4Q99570 1358 aa1.28□□□□□ -2.2
CD44-215ENST00000525241 DNMT1P26358 1616 aaKnown RBP1.28□□□□□ -2.2
CD44-215ENST00000525241 CHD2O14647 1828 aaKnown RBP1.28□□□□□ -2.2
CD44-215ENST00000525241 USP9XQ93008 2570 aaPredicted RBP1.28□□□□□ -2.2
CD44-215ENST00000525241 ATAD5Q96QE3 1844 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 MYO5BQ9ULV0 1848 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 PXDNLA1KZ92 1463 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 USP42Q9H9J4 1324 aaKnown RBP1.27□□□□□ -2.21
CD44-215ENST00000525241 K7ERQ8 282 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 LY6HO94772 140 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 GP1BAP07359 652 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 ACTR1BP42025 376 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 CD151P48509 253 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 XRCC4Q13426 336 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 PDK2Q15119 407 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 MAPK14Q16539 360 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 TPRXLQ17RH7 258 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 TIMM23BQ5SRD1 257 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 CLEC6AQ6EIG7 209 aa1.27□□□□□ -2.21
CD44-215ENST00000525241 MTERF4Q7Z6M4 381 aaKnown RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms