RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ENPP6Q6UWR7 440 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 HIST2H3AQ71DI3 136 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 FA2HQ7L5A8 372 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ERASQ7Z444 233 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GLT6D1Q7Z4J2 308 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PARGQ86W56 976 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CBLN2Q8IUK8 224 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C9orf40Q8IXQ3 194 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CBR4Q8N4T8 237 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SMIM20Q8N5G0 67 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 JAGN1Q8N5M9 183 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C8orf31Q8N9H6 132 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 Q8N9W7 124 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LINC00301Q8NCQ3 95 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TSTD1Q8NFU3 115 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR2Z1Q8NG97 314 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR4S1Q8NGB4 309 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR4K2Q8NGD2 314 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR10AD1Q8NGE0 317 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR56A4Q8NGH8 313 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR52E4Q8NGH9 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR51S1Q8NGJ8 323 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR51G2Q8NGK0 314 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR10D4PQ8NGN7 298 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR1L6Q8NGR2 347 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR6N1Q8NGY5 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR6N2Q8NGY6 317 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR5W2Q8NH69 310 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR1S1Q8NH92 325 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C15orf40Q8WUR7 153 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ST8SIA1Q92185 356 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PIGCQ92535 297 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DLX4Q92988 240 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 ARL11Q969Q4 196 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GALMQ96C23 342 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 C8orf44Q96CB5 159 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GPR146Q96CH1 333 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 SEH1LQ96EE3 360 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 WDR34Q96EX3 536 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 GALNT14Q96FL9 552 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 AURKBQ96GD4 344 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR10C1Q96KK4 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MS4A4EQ96PG1 132 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 COPS8Q99627 209 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MIEN1Q9BRT3 115 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PSMG3Q9BT73 122 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 FAAP24Q9BTP7 215 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 APOOQ9BUR5 198 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LINC00470Q9BZP3 86 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR2J1Q9GZK6 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MED28Q9H204 178 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PRO1933Q9H354 126 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 FAM124BQ9H5Z6 455 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 CALHM2Q9HA72 323 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TMEM27Q9HBJ8 222 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 EXOSC4Q9NPD3 245 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 MEPEQ9NQ76 525 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 PRSS16Q9NQE7 514 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 EXOSC3Q9NQT5 275 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 FBXO6Q9NRD1 293 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 UBQLN4Q9NRR5 601 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RBFOX1Q9NWB1 397 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 GPATCH2LQ9NWQ4 482 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MRPL16Q9NX20 251 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 MED29Q9NX70 200 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MRPL27Q9P0M9 148 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 PIPOXQ9P0Z9 390 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 COMMD3Q9UBI1 195 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 CLN8Q9UBY8 286 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NAT8Q9UHE5 227 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 IKZF2Q9UKS7 526 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 RAB22AQ9UL26 194 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TRAPPC2LQ9UL33 140 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 MCTS1Q9ULC4 181 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 SIGLEC9Q9Y336 463 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 AK6Q9Y3D8 172 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 CSDC2Q9Y534 153 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 OR51B2Q9Y5P1 312 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 COL5A1P20908 1838 aaPredicted RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 KIF13BQ9NQT8 1826 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 AGLP35573 1532 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LTN1O94822 1766 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 DISP2A7MBM2 1401 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ATRNO75882 1429 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 EDC4Q6P2E9 1401 aaKnown RBP1.32□□□□□ -2.2
NUP54-208ENST00000508604 RLFQ13129 1914 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 LOXHD1Q8IVV2 1947 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 NESP48681 1621 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ITGB4P16144 1822 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ECM29Q5VYK3 1845 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 ABCC8Q09428 1581 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 PTPRJQ12913 1337 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 TRAV38-1A0A0B4J264 116 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A0G2JLM5 398 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A0G2JND7 137 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 EXOC1LA0A1B0GW35 172 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PPE3 182 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PPV9 198 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PRD5 423 aa1.32□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PRF3 423 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms