RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TMEM269A0A1B0GVZ9 245 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 A0A1W2PPI3 338 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 PQLC2LA1A4F0 135 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 PSMB11A5LHX3 300 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 RFPL4AA6NLU0 287 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ZNF850A8MQ14 1090 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 A8MZ25 164 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 RFPL4AL1F8VTS6 287 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 CHST1O43916 411 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ZNF737O75373 536 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 FCN3O75636 299 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 SULT1C4O75897 302 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 CCNB2O95067 398 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 NXPH2O95156 264 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 NRASP01111 189 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 IGLV1-47P01700 117 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ARG1P05089 322 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 FRMD6-AS1P0C7T7 363 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 DBTP11182 482 aaKnown RBP3.02□□□□□ -1.93
USP54-217ENST00000498213 ALOX5APP20292 161 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 PRKACBP22694 351 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 GABRA2P47869 451 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 RAB7AP51149 207 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 PRKXP51817 358 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 CAPZA1P52907 286 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 AQP4P55087 323 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 DLX6P56179 175 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 RPL23AP62750 156 aaKnown RBP3.02□□□□□ -1.93
USP54-217ENST00000498213 CSNK2BP67870 215 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 RUNX1Q01196 453 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 PPP1R8Q12972 351 aaKnown RBP3.02□□□□□ -1.93
USP54-217ENST00000498213 MRPL28Q13084 256 aaKnown RBP3.02□□□□□ -1.93
USP54-217ENST00000498213 KIR2DS1Q14954 304 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 MEP1BQ16820 701 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 LRRC36Q1X8D7 754 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 MICAQ29983 383 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 FAM98BQ52LJ0 330 aaKnown RBP3.02□□□□□ -1.93
USP54-217ENST00000498213 KLHL12Q53G59 568 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ZNF826PQ6ZT77 177 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 TMEM179BQ7Z7N9 219 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ZNF429Q86V71 674 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 MKXQ8IYA7 352 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 SAXO1Q8IYX7 474 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 HS3ST5Q8IZT8 346 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 GBGT1Q8N5D6 347 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 TCTEX1D1Q8N7M0 179 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ZNF565Q8N9K5 539 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ZNRF1Q8ND25 227 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 OR5M8Q8NGP6 311 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 OR2T27Q8NH04 317 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 OR2AE1Q8NHA4 323 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 TEX47Q8TBZ9 253 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 HPSE2Q8WWQ2 592 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 NRBF2Q96F24 287 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 TSSK2Q96PF2 358 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 P2RX4Q99571 388 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 NKX3-1Q99801 234 aaPredicted RBP3.02□□□□□ -1.93
USP54-217ENST00000498213 SLC29A1Q99808 456 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 GFRA4Q9GZZ7 299 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 TMEM133Q9H2Q1 129 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 REEP1Q9H902 201 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 ARMC1Q9NVT9 282 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 HHLA2Q9UM44 414 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 SLC7A11Q9UPY5 501 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 SLC22A13Q9Y226 551 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 MOB4Q9Y3A3 225 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 AP4S1Q9Y587 144 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 SNX5Q9Y5X3 404 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 HSPE1-MOB4S4R3N1 261 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 HMCN2Q8NDA2 5059 aa3.02□□□□□ -1.93
USP54-217ENST00000498213 MYCBP2O75592 4640 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 IGKV3D-20A0A0C4DH25 116 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 TRBV2A0A0J9YWF9 115 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 ZNF729A6NN14 1252 aaPredicted RBP3.01□□□□□ -1.93
USP54-217ENST00000498213 ZNF732B4DXR9 585 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 TNFRSF11BO00300 401 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 AKR7A2O43488 359 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 MPZL2O60487 215 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 PAGE4O60829 102 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 DIRAS1O95057 198 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 IGHG2P01859 326 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 MT-ND2P03891 347 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 IGF1P05019 195 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 ANXA8P13928 327 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 VHLP40337 213 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 YAP1P46937 504 aaKnown RBP3.01□□□□□ -1.93
USP54-217ENST00000498213 HAAOP46952 286 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 GPM6AP51674 278 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 LUMP51884 338 aaPredicted RBP3.01□□□□□ -1.93
USP54-217ENST00000498213 RIDAP52758 137 aaKnown RBP3.01□□□□□ -1.93
USP54-217ENST00000498213 ACTA2P62736 377 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 ACTG2P63267 376 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 ACTC1P68032 377 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 ACTA1P68133 377 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 MADCAM1Q13477 382 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 APOFQ13790 326 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 CRMP1Q14194 572 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 EBI3Q14213 229 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 ATP6AP1Q15904 470 aa3.01□□□□□ -1.93
USP54-217ENST00000498213 SSX2Q16385 188 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms