RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 K7EPK0 472 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 GATCO43716 136 aaKnown RBP7.05□□□□□ -1.28
USP54-215ENST00000497106 CDS2O95674 445 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 CLDN1O95832 211 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 ZNF735P0CB33 412 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 EPHA1P21709 976 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 CEACAM3P40198 252 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 HMGN3Q15651 99 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 TBC1D26Q86UD7 250 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 FAM71E2Q8N5Q1 922 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 RBPMSQ93062 196 aaKnown RBP7.05□□□□□ -1.28
USP54-215ENST00000497106 SDSLQ96GA7 329 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 GCM1Q9NP62 436 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 ELF5Q9UKW6 265 aaPredicted RBP7.05□□□□□ -1.28
USP54-215ENST00000497106 NSG2Q9Y328 171 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 TRBV6-7A0A0A0MS04 114 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 FOXI3A8MTJ6 420 aaPredicted RBP7.05□□□□□ -1.28
USP54-215ENST00000497106 HMSDA8MTL9 139 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 WNT9BO14905 357 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 SIGLEC5O15389 551 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 LILRA1O75019 489 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 TPT1P13693 172 aaKnown RBP7.05□□□□□ -1.28
USP54-215ENST00000497106 PI3P19957 117 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 ERVFRD-1P60508 538 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 ADORA2A-AS1P86434 159 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 ZNF124Q15973 351 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 C17orf107Q6ZR85 190 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 PSG11Q9UQ72 335 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 LINC00312Q9Y6C7 94 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 BPTFQ12830 3046 aa7.05□□□□□ -1.28
USP54-215ENST00000497106 TNRC18O15417 2968 aaPredicted RBP7.05□□□□□ -1.28
USP54-215ENST00000497106 PTBP3O95758 552 aaKnown RBP7.04□□□□□ -1.28
USP54-215ENST00000497106 HRASP01112 189 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 SCTP09683 121 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 VSIG10L2P0DP72 767 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 LGALS4P56470 323 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 GAPTQ8N292 157 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 OR13D1Q8NGV5 346 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 ST6GAL2Q96JF0 529 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 HEXA-AS1Q9H8Q6 139 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 KLF2Q9Y5W3 355 aaPredicted RBP7.04□□□□□ -1.28
USP54-215ENST00000497106 E7EQL1 145 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 K7N7A8 449 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 CYB5BO43169 146 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 SCGB2A1O75556 95 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 WISP2O76076 250 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 ACTL6BO94805 426 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 OR5AC1P0C628 307 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 TMEM33P57088 247 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 BPIFB3P59826 476 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 GNB2P62879 340 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 BTNL3Q6UXE8 466 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 ACOT7LQ6ZUV0 252 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 OR52M1Q8NGK5 317 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 OR4S2Q8NH73 311 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 SCGB1C1Q8TD33 95 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 GALNT14Q96FL9 552 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 TMPRSS13Q9BYE2 586 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 THBDP07204 575 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 VDAC1P21796 283 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 CCKARP32238 428 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 RAB13P51153 203 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 Q6ZR03 302 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 LHFPL1Q86WI0 220 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 FYTTD1Q96QD9 318 aaKnown RBP7.04□□□□□ -1.28
USP54-215ENST00000497106 PIMREGQ9BSJ6 248 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 PHF3Q92576 2039 aaKnown RBP7.04□□□□□ -1.28
USP54-215ENST00000497106 ZNF98A6NK75 572 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 M0R1X1 148 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 S100A11P31949 105 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 ABHD14AQ9BUJ0 271 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 CCL28Q9NRJ3 127 aa7.04□□□□□ -1.28
USP54-215ENST00000497106 RALYQ9UKM9 306 aaKnown RBP7.04□□□□□ -1.28
USP54-215ENST00000497106 TMEM178BH3BS89 294 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 RAB29O14966 203 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 HBG1P69891 147 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 HBG2P69892 147 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 C11orf87Q6NUJ2 197 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 PLPPR1Q8TBJ4 325 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 SEC22AQ96IW7 307 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 C5orf66Q9H5L9 145 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 HPXP02790 462 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 CAV2P51636 162 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 TEX36Q5VZQ5 186 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 GGNBP1Q5YKI7 109 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 CLEC2AQ6UVW9 174 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 ADAD2Q8NCV1 583 aaKnown RBP7.03□□□□□ -1.28
USP54-215ENST00000497106 TSNAXQ99598 290 aaKnown RBP7.03□□□□□ -1.28
USP54-215ENST00000497106 CCL19Q99731 98 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 HIPK2Q9H2X6 1198 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 CEACAM18A8MTB9 384 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 CEBPZOSA8MTT3 80 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 CCSO14618 274 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 DFFBO76075 338 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 SIX6O95475 246 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 F2RP25116 425 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 CEBPDP49716 269 aaPredicted RBP7.03□□□□□ -1.28
USP54-215ENST00000497106 DSCR9P59020 149 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 OPCMLQ14982 345 aa7.03□□□□□ -1.28
USP54-215ENST00000497106 PRAMEF5Q5TYX0 476 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms