RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 ARL11Q969Q4 196 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 OR14A2Q96R54 314 aa9.75□□□□□ -0.85
SDC3-204ENST00000487984 NAA50Q9GZZ1 169 aaKnown RBP9.75□□□□□ -0.85
SDC3-204ENST00000487984 AURKAIP1Q9NWT8 199 aaPredicted RBP9.75□□□□□ -0.85
SDC3-204ENST00000487984 A0A1W2PPK0 400 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 PSMB11A5LHX3 300 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 SDCBPO00560 298 aaPredicted RBP9.74□□□□□ -0.85
SDC3-204ENST00000487984 IGKV1D-33P01593 117 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 IGKV1-33P01594 117 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 SOX6P35712 828 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 RANBP1P43487 201 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 REG1BP48304 166 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 SERPINB10P48595 397 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 ZNF816Q0VGE8 651 aaPredicted RBP9.74□□□□□ -0.85
SDC3-204ENST00000487984 HSD17B12Q53GQ0 312 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 FOXB2Q5VYV0 432 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 C22orf42Q6IC83 251 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 FAM53AQ6NSI3 398 aaPredicted RBP9.74□□□□□ -0.85
SDC3-204ENST00000487984 GLIPR1L1Q6UWM5 242 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 UNQ9370/PRO34162Q6UXP9 181 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 ZNF497Q6ZNH5 498 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 TPRA1Q86W33 373 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 JAGN1Q8N5M9 183 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 OR52M1Q8NGK5 317 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 MRAPQ8TCY5 172 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 NEK7Q8TDX7 302 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 NOL4LQ96MY1 436 aaPredicted RBP9.74□□□□□ -0.85
SDC3-204ENST00000487984 CENPOQ9BU64 300 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 DCSTAMPQ9H295 470 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 GFOD1Q9NXC2 390 aa9.74□□□□□ -0.85
SDC3-204ENST00000487984 RCC2Q9P258 522 aaKnown RBP9.74□□□□□ -0.85
SDC3-204ENST00000487984 MRPS28Q9Y2Q9 187 aaKnown RBP9.74□□□□□ -0.85
SDC3-204ENST00000487984 IGHV3-43A0A0B4J1X8 118 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 IGHV3-72A0A0B4J1Y9 119 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 IGHV1-3A0A0C4DH29 117 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 AIPO00170 330 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 PDCD5O14737 125 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 FGF16O43320 207 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 ORC5O43913 435 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 SC5DO75845 299 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 MT-ND4P03905 459 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 UCHL1P09936 223 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 IGHV3-43DP0DP04 118 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 CALRP27797 417 aaKnown RBP9.73□□□□□ -0.85
SDC3-204ENST00000487984 PSMD7P51665 324 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 LOXL3P58215 753 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 NCS1P62166 190 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 GPR176Q14439 515 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 CNPY1Q3B7I2 92 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 TMEM91Q6ZNR0 172 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 ZNF329Q86UD4 541 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 CROCCP3Q8IVE0 287 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 LINC00311Q8N616 119 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 C8orf31Q8N9H6 132 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 DERL3Q96Q80 235 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 SPACA1Q9HBV2 294 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 PTTG2Q9NZH5 202 aa9.73□□□□□ -0.85
SDC3-204ENST00000487984 TRAV1-2A0A0B4J238 106 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 C12orf77C9JDV5 145 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 MCRIP1C9JLW8 97 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 MAS1P04201 325 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 GAPDHP04406 335 aaKnown RBP9.72□□□□□ -0.85
SDC3-204ENST00000487984 EBI3Q14213 229 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 AWAT2Q6E213 333 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 MOB3BQ86TA1 216 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 LYPD6Q86Y78 171 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 IZUMO1Q8IYV9 350 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 CHPT1Q8WUD6 406 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 MRPS24Q96EL2 167 aaKnown RBP9.72□□□□□ -0.85
SDC3-204ENST00000487984 BANF2Q9H503 90 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 ETAA1Q9NY74 926 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 LINC00527Q9UJ94 153 aa9.72□□□□□ -0.85
SDC3-204ENST00000487984 SERPINE3A8MV23 424 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 SLC31A2O15432 143 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 TMEM127O75204 238 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 IGHG2P01859 326 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 MGMTP16455 207 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 RORCP51449 518 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 RPL23AP62750 156 aaKnown RBP9.71□□□□□ -0.86
SDC3-204ENST00000487984 SPCS2Q15005 226 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 Q3ZCU0 254 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 RAB12Q6IQ22 244 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 ETV3LQ6ZN32 361 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 SLC35E3Q7Z769 313 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 CDH26Q8IXH8 852 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 GAPTQ8N292 157 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 Q8N6K4 173 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 LINC00482Q8N8I6 264 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 TMEM104Q8NE00 496 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 OR4K15Q8NH41 348 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 RTN4IP1Q8WWV3 396 aaPredicted RBP9.71□□□□□ -0.86
SDC3-204ENST00000487984 AP3S1Q92572 193 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 ST6GALNAC6Q969X2 333 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 RCC1LQ96I51 464 aaKnown RBP9.71□□□□□ -0.86
SDC3-204ENST00000487984 CYYR1Q96J86 154 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 EAF1Q96JC9 268 aaPredicted RBP9.71□□□□□ -0.86
SDC3-204ENST00000487984 DCUN1D5Q9BTE7 237 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 SELENOIQ9C0D9 397 aa9.71□□□□□ -0.86
SDC3-204ENST00000487984 CCDC59Q9P031 241 aaKnown RBP9.71□□□□□ -0.86
SDC3-204ENST00000487984 TRAPPC2LQ9UL33 140 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms