RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 CCBE1Q6UXH8 406 aaPredicted RBP12.15□□□□□ -0.46
VARS-223ENST00000474643 BAIAP2L2Q6UXY1 529 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 ZNF497Q6ZNH5 498 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 C16orf82Q7Z2V1 217 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 NDUFA11Q86Y39 141 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 ARL11Q969Q4 196 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 NICN1Q9BSH3 213 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 DCSTAMPQ9H295 470 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 CHMP1AQ9HD42 196 aaPredicted RBP12.15□□□□□ -0.46
VARS-223ENST00000474643 RAB9BQ9NP90 201 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 PLEKHJ1Q9NW61 149 aa12.15□□□□□ -0.46
VARS-223ENST00000474643 A0A1W2PRX2 142 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 DPPA5A6NC42 116 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 CA11O75493 328 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 MT-ND4P03905 459 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 GDNFP39905 211 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 RORCP51449 518 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 LSM3P62310 102 aaKnown RBP12.14□□□□□ -0.47
VARS-223ENST00000474643 C2orf76Q3KRA6 126 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 C9orf152Q5JTZ5 239 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 C6orf183Q5T699 404 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 CCDC144NLQ6NUI1 221 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 CENPVQ7Z7K6 275 aaPredicted RBP12.14□□□□□ -0.47
VARS-223ENST00000474643 NR2C2APQ86WQ0 139 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 PRR18Q8N4B5 295 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 UBALD1Q8TB05 177 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 ACOT12Q8WYK0 555 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 KIRREL1Q96J84 757 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 TM2D1Q9BX74 207 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 RNF167Q9H6Y7 350 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 SERTAD4Q9NUC0 356 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 KCNIP1Q9NZI2 227 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 ABRACLQ9P1F3 81 aa12.14□□□□□ -0.47
VARS-223ENST00000474643 AMMECR1Q9Y4X0 333 aaPredicted RBP12.14□□□□□ -0.47
VARS-223ENST00000474643 SPINT2O43291 252 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 IGHV3-7P01780 117 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 CD24P25063 80 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 CHATP28329 748 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 SOX6P35712 828 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 SERPINB10P48595 397 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 VEGFCP49767 419 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 GNG10P50151 68 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 BLCAPP62952 87 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 MXD1Q05195 221 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 TMEM95Q3KNT9 176 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 LDLRAD2Q5SZI1 272 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 SIGIRRQ6IA17 410 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 TRAT1Q6PIZ9 186 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 C6orf201Q7Z4U5 140 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 Q8N2B8 174 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 OR4P4Q8NGL7 312 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 SETD6Q8TBK2 473 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 AP3S1Q92572 193 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 LEAP2Q969E1 77 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 CMTM3Q96MX0 182 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 CITED2Q99967 270 aaPredicted RBP12.13□□□□□ -0.47
VARS-223ENST00000474643 SLC25A33Q9BSK2 321 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 FAAP24Q9BTP7 215 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 LPAR5Q9H1C0 372 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 ZNF286AQ9HBT8 521 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 CCDC59Q9P031 241 aaKnown RBP12.13□□□□□ -0.47
VARS-223ENST00000474643 RAB22AQ9UL26 194 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 ETV7Q9Y603 341 aa12.13□□□□□ -0.47
VARS-223ENST00000474643 TMEM272A0A1B0GTI8 110 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 SDCBPO00560 298 aaPredicted RBP12.12□□□□□ -0.47
VARS-223ENST00000474643 LDLRAD4O15165 306 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 SOCS1O15524 211 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 ORC5O43913 435 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 PF4P02776 101 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 CGB3P0DN86 165 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 CGB7P0DN87 165 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 ZNF182P17025 639 aaPredicted RBP12.12□□□□□ -0.47
VARS-223ENST00000474643 CD33P20138 364 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 RAB6AP20340 208 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 QRFPP83859 136 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 HES1Q14469 280 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 REC114Q7Z4M0 266 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 OR5AU1Q8NGC0 362 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 OR10A7Q8NGE5 316 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 OR4X2Q8NGF9 303 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 OR56B1Q8NGI3 324 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 OR9G1Q8NH87 305 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 DYNC2LI1Q8TCX1 351 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 TOMM40LQ969M1 308 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 RPEQ96AT9 228 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 SULT4A1Q9BR01 284 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 MMP28Q9H239 520 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 LIN7BQ9HAP6 207 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 A3GALT2U3KPV4 340 aa12.12□□□□□ -0.47
VARS-223ENST00000474643 IGHV3-43A0A0B4J1X8 118 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 CCDC160A6NGH7 325 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 NPIPB11E5RHQ5 1161 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 SCGNO76038 276 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 LPLP06858 475 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 IGHV3-43DP0DP04 118 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 SLC2A2P11168 524 aaPredicted RBP12.11□□□□□ -0.47
VARS-223ENST00000474643 CD34P28906 385 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 MRPS15P82914 257 aaKnown RBP12.11□□□□□ -0.47
VARS-223ENST00000474643 SPCS2Q15005 226 aa12.11□□□□□ -0.47
VARS-223ENST00000474643 ABCA11PQ4W5N1 156 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms