RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 UBBP0CG47 229 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 ZNF134P52741 427 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 GNMTQ14749 295 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 TMEM30BQ3MIR4 351 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 HSD17B12Q53GQ0 312 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 CT45A1Q5HYN5 189 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 GLT8D1Q68CQ7 371 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 CEACAM19Q7Z692 300 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 TGIF2LXQ8IUE1 241 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 FOXRED2Q8IWF2 684 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 CT45A3Q8NHU0 189 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 MRPL30Q8TCC3 161 aaKnown RBP12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 NEDD4LQ96PU5 975 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 OR2S2Q9NQN1 319 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 KCNIP1Q9NZI2 227 aa12.42□□□□□ -0.42
CCDC88B-205ENST00000472524 MOSP00540 346 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 IGHG2P01859 326 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 VSIG8P0DPA2 414 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 CD1BP29016 333 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 SLC35A2P78381 396 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 LIPKQ5VXJ0 399 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 Q8N6K4 173 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 Q8N9W7 124 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 WFDC9Q8NEX5 89 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 OR52L2PQ8NGH6 319 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 PHYHIPQ92561 330 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 UFD1Q92890 307 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 TMEM203Q969S6 136 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 SULT4A1Q9BR01 284 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 TMEM59Q9BXS4 323 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 MBNL3Q9NUK0 354 aaKnown RBP12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 TPRKBQ9Y3C4 175 aa12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 KMT2CQ8NEZ4 4911 aaKnown RBP12.41□□□□□ -0.42
CCDC88B-205ENST00000472524 LINC01548A6NM66 108 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 NUDT19A8MXV4 375 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 TXNL1O43396 289 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 HSMCR30P0CW71 290 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 SRMP19623 302 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 CHATP28329 748 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 PPP1CCP36873 323 aaKnown RBP12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 ZNF137PP52743 207 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 RPL23AP62750 156 aaKnown RBP12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 RPS27AP62979 156 aaKnown RBP12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 SLC35B1P78383 322 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 IRF3Q14653 427 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 MORN2Q502X0 79 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 C1orf100Q5SVJ3 147 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 C18orf65Q6ZTR6 163 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 C6orf201Q7Z4U5 140 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 STPG2Q8N412 459 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 NICN1Q9BSH3 213 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 FAAP24Q9BTP7 215 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 ABCG5Q9H222 651 aa12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 LIN7CQ9NUP9 197 aaKnown RBP12.4□□□□□ -0.42
CCDC88B-205ENST00000472524 RGS10O43665 173 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 UCHL1P09936 223 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 HTR2CP28335 458 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 GPR12P47775 334 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 UNC119Q13432 240 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 OR2W3Q7Z3T1 314 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 KLHL30-AS1Q8NEE0 82 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 OR51D1Q8NGF3 324 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 S1PR3Q99500 378 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 RASL11BQ9BPW5 248 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 ABHD14AQ9BUJ0 271 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 CCDC90BQ9GZT6 254 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 JPT1Q9UK76 154 aa12.39□□□□□ -0.43
CCDC88B-205ENST00000472524 AP4M1O00189 453 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 LANCL1O43813 399 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 MYF6P23409 242 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 RPS25P62851 125 aaKnown RBP12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 LSAMPQ13449 338 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 ETV3LQ6ZN32 361 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 C8orf86Q6ZUL3 223 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 ZNF554Q86TJ5 538 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 KCNG3Q8TAE7 436 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 SETD6Q8TBK2 473 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 RCC1LQ96I51 464 aaKnown RBP12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 TM2D1Q9BX74 207 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 CHMP1AQ9HD42 196 aaPredicted RBP12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 PLSCR3Q9NRY6 295 aa12.38□□□□□ -0.43
CCDC88B-205ENST00000472524 TMEM14DPA8MWL7 114 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 K7EIL1 84 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 SLC22A1O15245 554 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 BPNT1O95861 308 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 BLVRBP30043 206 aaPredicted RBP12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 MAP2K4P45985 399 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 F2RL1P55085 397 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 HTD2P86397 168 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 P2RY14Q15391 338 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 HMGN3Q15651 99 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 STEAP3Q658P3 488 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 TMEM91Q6ZNR0 172 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 MRPL41Q8IXM3 137 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 COMMD1Q8N668 190 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 LINC00482Q8N8I6 264 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 OR6M1Q8NGM8 313 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 IL1F10Q8WWZ1 152 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 GALMQ96C23 342 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 HSPB9Q9BQS6 159 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms