RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 COL5A1-AS1Q5SY13 56 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 STXBP6Q8NFX7 210 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 OR1K1Q8NGR3 316 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 WDR54Q9H977 334 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 PLXNB2O15031 1838 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 SNURFLB1AK76 121 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 MPDU1O75352 247 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 IGHMP01871 453 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 TRGC2P03986 189 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 IER3P46695 156 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 C5orf66Q9H5L9 145 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 ARID2Q68CP9 1835 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 SHISA3A0PJX4 238 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 IGSF23A1L1A6 192 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 DHRS7CA6NNS2 312 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 LYRM7Q5U5X0 104 aa16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 ZNF552Q9H707 407 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-204ENST00000463837 A0A0G2JK05 382 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 CRYBA2P53672 197 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 HIST1H2BAQ96A08 127 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 CTHRC1Q96CG8 243 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 CISD1Q9NZ45 108 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 NPIPB9F8W1W9 429 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 RECKO95980 971 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 TFF2Q03403 129 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 SLC25A47Q6Q0C1 308 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 OR1P1Q8NH06 330 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 APOBEC4Q8WW27 367 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 TBX15Q96SF7 602 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 FAM206AQ9NX38 181 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 ISLRO14498 428 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 ACTL6AO96019 429 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 CD82P27701 267 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 ZNF343Q6P1L6 599 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 TEPPQ6URK8 271 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 POC1AQ8NBT0 407 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 A0A0B4J293 547 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 C21orf140B9A014 251 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 EIF4E3Q8N5X7 224 aaKnown RBP16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 APCSP02743 223 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 BRS3P32247 399 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 KLF3P57682 345 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 MEF2BQ02080 365 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 HFEQ30201 348 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 SLC23A3Q6PIS1 610 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 OR2M7Q8NG81 312 aa16.53■□□□□ 0.24
CCDC88B-204ENST00000463837 ZNF785A8K8V0 405 aa16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 ORM2P19652 201 aa16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 RPS11P62280 158 aaKnown RBP eCLIP16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 RP1P56715 2156 aa16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 TRAV39A0A0B4J263 110 aa16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 FGF12P61328 243 aa16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 GAMTQ14353 236 aa16.52■□□□□ 0.24
CCDC88B-204ENST00000463837 TRPM6Q9BX84 2022 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 FAM157CP0CG43 387 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 S100A4P26447 101 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 ZNF83P51522 516 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 RPL24P83731 157 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 RIGQ13278 110 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 G6PC2Q9NQR9 355 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 NAGKQ9UJ70 344 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 HSPB8Q9UJY1 196 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 NPIPB13A6NJU9 1138 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 NPIPB4C9JG80 1138 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 FAM87AP0C7U9 286 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 HIST1H1EP10412 219 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 DDTP30046 118 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 G6PCP35575 357 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 RPL13AP40429 203 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 WDFY1Q8IWB7 410 aa16.52■□□□□ 0.23
CCDC88B-204ENST00000463837 SH2D7A6NKC9 451 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 FAM90A26D6RGX4 464 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 BMI1P35226 326 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 TMEM14DPA8MWL7 114 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 SMPD2O60906 423 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 GABRA6Q16445 453 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 SOSTQ9BQB4 213 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 LOC102724200A0A096LPH7 203 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 FAM90A27PA6NNH2 459 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 P01737 135 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 SMRP1Q8NCR6 262 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 OR8G5Q8NG78 346 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 SGMS2Q8NHU3 365 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 ABHD14AQ9BUJ0 271 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 A0A1W2PP11 408 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 C4orf51C9J302 202 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 UCP3P55916 312 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 DHRS11Q6UWP2 260 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 UCN2Q96RP3 112 aa16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 AMMECR1Q9Y4X0 333 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-204ENST00000463837 DIRC3C9JPN6 131 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 SMIM17P0DL12 118 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 KLK2P20151 261 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 TNFAIP6P98066 277 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 ZNF385CQ66K41 422 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 CT55Q8WUE5 264 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 SCN3AQ9NY46 2000 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 IGKV1D-42A0A075B6H8 117 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 A6NDN8 102 aa16.5■□□□□ 0.23
CCDC88B-204ENST00000463837 TCF21O43680 179 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms