RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 SURF2Q15527 256 aaPredicted RBP13.4□□□□□ -0.27
PTPRF-206ENST00000429895 SLC25A53Q5H9E4 307 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 DPPA3Q6W0C5 159 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 TMEM251Q8N6I4 163 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 ITLN1Q8WWA0 313 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 NEU3Q9UQ49 428 aa13.4□□□□□ -0.27
PTPRF-206ENST00000429895 PLAUP00749 431 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 C1orf53Q5VUE5 145 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 SNX22Q96L94 193 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 CHST5Q9GZS9 411 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 IGHV1-45A0A0A0MS14 117 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 SNURFLB1AK76 121 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 FOXS1O43638 330 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 VSIG8P0DPA2 414 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 LINC00596Q86U02 117 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 PIMREGQ9BSJ6 248 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 ADAMTSL3P82987 1691 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 KLF9Q13886 244 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 OIT3Q8WWZ8 545 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 DIRC2Q96SL1 478 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 A0A1W2PQF6 199 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 KLF7O75840 302 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 CRHP06850 196 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 BTF3P20290 206 aaKnown RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 EFNB2P52799 333 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 CLPPQ16740 277 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 FADS6Q8N9I5 356 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 OR8G5Q8NG78 346 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 PDE6DO43924 150 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 CYB5R3P00387 301 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 GAPDHP04406 335 aaKnown RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 HIST1H1BP16401 226 aaKnown RBP13.39□□□□□ -0.27
PTPRF-206ENST00000429895 OR4A5Q8NH83 315 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 RNF133Q8WVZ7 376 aa13.39□□□□□ -0.27
PTPRF-206ENST00000429895 C5orf67F2Z3F1 127 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 HYPMO75409 117 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 TAS2R60P59551 318 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 PLPPR5Q32ZL2 321 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 ZNF826PQ6ZT77 177 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 OR4B1Q8NGF8 309 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 AP4M1O00189 453 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 PSG4Q00888 419 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 UNQ5815/PRO19632Q6UWF5 114 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 HSPB8Q9UJY1 196 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 SUCLG1P53597 346 aaKnown RBP13.38□□□□□ -0.27
PTPRF-206ENST00000429895 RBM11P57052 281 aaKnown RBP13.38□□□□□ -0.27
PTPRF-206ENST00000429895 IGKV3OR2-268A0A0C4DH90 116 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 CENPVL1A0A0U1RR11 272 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 A0A1B0GU03 582 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 ISLRO14498 428 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 IGKV1D-16P01601 117 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 TMEM78Q5T7P6 136 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 SLC16A13Q7RTY0 426 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 STXBP6Q8NFX7 210 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 OR4C12Q96R67 309 aa13.38□□□□□ -0.27
PTPRF-206ENST00000429895 TMEM189A5PLL7 270 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 CEACAM18A8MTB9 384 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 RPL27AP46776 148 aaKnown RBP13.37□□□□□ -0.27
PTPRF-206ENST00000429895 GABRA6Q16445 453 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 RSG1Q9BU20 258 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 KLHDC2Q9Y2U9 406 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 CD81P60033 236 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 KRTCAP3Q53RY4 240 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 OR4C45A6NMZ5 311 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 HBZP02008 142 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 NMUP48645 174 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 RAG2P55895 527 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 PNRC1Q12796 327 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-206ENST00000429895 ATP1A1-AS1Q5TC04 95 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 FAM214BQ7L5A3 538 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 SLC25A33Q9BSK2 321 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 ADIPOQQ15848 244 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 DOCK1Q14185 1865 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 SCN9AQ15858 1988 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 HMSDA8MTL9 139 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 TGIF1Q15583 401 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 SSX8Q7RTT4 187 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 ZNF501Q96CX3 271 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-206ENST00000429895 ANGPTL4Q9BY76 406 aa13.37□□□□□ -0.27
PTPRF-206ENST00000429895 MAS1LP35410 378 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 ZBTB34Q8NCN2 500 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 DDB2Q92466 427 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 MARVELD1Q9BSK0 173 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 NHSQ6T4R5 1651 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 M0R143 59 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 GFRA3O60609 400 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 PACRGQ96M98 296 aaPredicted RBP13.36□□□□□ -0.27
PTPRF-206ENST00000429895 CTDSPLO15194 276 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 SLC22A18ASQ8N1D0 253 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 OR5AU1Q8NGC0 362 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 IL36RNQ9UBH0 155 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 CXCL3P19876 107 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 IGSF11Q5DX21 431 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 ST6GAL2Q96JF0 529 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 GPA33Q99795 319 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 KLK13Q9UKR3 277 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 GLI3P10071 1580 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 HPRT1P00492 218 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 ATP5J2P56134 94 aa13.36□□□□□ -0.27
PTPRF-206ENST00000429895 PRSS8Q16651 343 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms