RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 INSL4Q14641 139 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 KIR2DS1Q14954 304 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 C8orf31Q8N9H6 132 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 ZNF485Q8NCK3 441 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 OR5M8Q8NGP6 311 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 MRPL20Q9BYC9 149 aaKnown RBP9.04□□□□□ -0.96
USP4-204ENST00000416417 KCNK15Q9H427 330 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 GNB4Q9HAV0 340 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 TAF9BQ9HBM6 251 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 CKLFQ9UBR5 152 aa9.04□□□□□ -0.96
USP4-204ENST00000416417 SEC14L6B5MCN3 397 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 GPX5O75715 221 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 ELANEP08246 267 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 FSTP19883 344 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 SLC6A1P30531 599 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 OR3A3P47888 321 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 ST3GAL4Q11206 333 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 LSAMPQ13449 338 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 MMDQ15546 238 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 YIF1BQ5BJH7 314 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 NKAPLQ5M9Q1 402 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 C6orf183Q5T699 404 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 OR10K2Q6IF99 312 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 LAIR2Q6ISS4 152 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 OR8U1Q8NH10 309 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 WWC2-AS2Q96NR7 200 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 DERL3Q96Q80 235 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 OR2S2Q9NQN1 319 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 CHCHD3Q9NX63 227 aaKnown RBP9.03□□□□□ -0.96
USP4-204ENST00000416417 ZNF107Q9UII5 783 aaPredicted RBP9.03□□□□□ -0.96
USP4-204ENST00000416417 SCOCQ9UIL1 159 aa9.03□□□□□ -0.96
USP4-204ENST00000416417 RRP9O43818 475 aaKnown RBP9.02□□□□□ -0.97
USP4-204ENST00000416417 IGHG4P01861 327 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 GNAO1P09471 354 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 ZNF137PP52743 207 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 GPR176Q14439 515 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 ZNF260Q3ZCT1 412 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 MORN2Q502X0 79 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 FAM27D1Q5T7N8 215 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 LYPD6Q86Y78 171 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 ODF3L1Q8IXM7 274 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 C10orf67Q8IYJ2 551 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 RNF152Q8N8N0 203 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 OR11H1Q8NG94 326 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 MRPL30Q8TCC3 161 aaKnown RBP9.02□□□□□ -0.97
USP4-204ENST00000416417 CASTOR1Q8WTX7 329 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 Q96M66 194 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 RDH12Q96NR8 316 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 ALX4Q9H161 411 aaPredicted RBP9.02□□□□□ -0.97
USP4-204ENST00000416417 SPACA1Q9HBV2 294 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 PARP11Q9NR21 331 aa9.02□□□□□ -0.97
USP4-204ENST00000416417 LSM4Q9Y4Z0 139 aaKnown RBP9.02□□□□□ -0.97
USP4-204ENST00000416417 IRGMA1A4Y4 181 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 ATP6V0E1O15342 81 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 LANCL1O43813 399 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 SNRPBP14678 240 aaKnown RBP9.01□□□□□ -0.97
USP4-204ENST00000416417 CELP19835 753 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 FUT3P21217 361 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 PSMB8P28062 276 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 CAPGP40121 348 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 ACTBP60709 375 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 GNB1P62873 340 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 KIAA0141Q14154 515 aaPredicted RBP9.01□□□□□ -0.97
USP4-204ENST00000416417 C9orf66Q5T8R8 295 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 ASPHD1Q5U4P2 390 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 AHSA2Q719I0 299 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 GAPTQ8N292 157 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 C4orf3Q8WVX3 66 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 NABP2Q9BQ15 211 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 SULT4A1Q9BR01 284 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 ABHD14AQ9BUJ0 271 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 GON7Q9BXV9 100 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 ANKRD60Q9BZ19 345 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 TENM3Q9P273 2699 aa9.01□□□□□ -0.97
USP4-204ENST00000416417 TXNL1O43396 289 aa9□□□□□ -0.97
USP4-204ENST00000416417 PDCD6O75340 191 aa9□□□□□ -0.97
USP4-204ENST00000416417 SC5DO75845 299 aa9□□□□□ -0.97
USP4-204ENST00000416417 LY86O95711 162 aa9□□□□□ -0.97
USP4-204ENST00000416417 IGF1P05019 195 aa9□□□□□ -0.97
USP4-204ENST00000416417 GP2P55259 537 aaKnown RBP9□□□□□ -0.97
USP4-204ENST00000416417 Q3ZCU0 254 aa9□□□□□ -0.97
USP4-204ENST00000416417 DHRSXQ8N5I4 330 aa9□□□□□ -0.97
USP4-204ENST00000416417 OR8H1Q8NGG4 311 aa9□□□□□ -0.97
USP4-204ENST00000416417 FAAP24Q9BTP7 215 aa9□□□□□ -0.97
USP4-204ENST00000416417 PARP12Q9H0J9 701 aaKnown RBP9□□□□□ -0.97
USP4-204ENST00000416417 MBNL3Q9NUK0 354 aaKnown RBP9□□□□□ -0.97
USP4-204ENST00000416417 KCNIP1Q9NZI2 227 aa9□□□□□ -0.97
USP4-204ENST00000416417 FBXO7Q9Y3I1 522 aa9□□□□□ -0.97
USP4-204ENST00000416417 U3KQK5 164 aa9□□□□□ -0.97
USP4-204ENST00000416417 IGHV7-81A0A0B4J1V7 117 aa9□□□□□ -0.97
USP4-204ENST00000416417 ST8SIA5O15466 376 aa9□□□□□ -0.97
USP4-204ENST00000416417 RAMP3O60896 148 aa9□□□□□ -0.97
USP4-204ENST00000416417 BLVRBP30043 206 aaPredicted RBP9□□□□□ -0.97
USP4-204ENST00000416417 PPIFP30405 207 aaKnown RBP9□□□□□ -0.97
USP4-204ENST00000416417 NDPQ00604 133 aa9□□□□□ -0.97
USP4-204ENST00000416417 MED21Q13503 144 aa9□□□□□ -0.97
USP4-204ENST00000416417 FHL3Q13643 280 aa9□□□□□ -0.97
USP4-204ENST00000416417 TTC23Q5W5X9 447 aa9□□□□□ -0.97
USP4-204ENST00000416417 TMEM65Q6PI78 240 aa9□□□□□ -0.97
USP4-204ENST00000416417 GLDNQ6ZMI3 551 aaPredicted RBP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms