RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CLDN23Q96B33 292 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 WDYHV1Q96HA8 205 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 PARP14Q460N5 1801 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 GVINP1Q7Z2Y8 2422 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TRAV39A0A0B4J263 110 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 ZNF732B4DXR9 585 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 DXOO77932 396 aaKnown RBP8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TSPAN7P41732 249 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 UQCRFS1P47985 274 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TCTAP57738 103 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 ACSM6Q6P461 480 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 SFTPA2Q8IWL1 248 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TAF15Q92804 592 aaKnown RBP eCLIP8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TPPP3Q9BW30 176 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 GSX1Q9H4S2 264 aaPredicted RBP8.07□□□□□ -1.12
COL28A1-201ENST00000399429 SDK2Q58EX2 2172 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 DHHO43323 396 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 LYL1P12980 280 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 GALNSP34059 522 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 RABIFP47224 123 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 AAED1Q7RTV5 226 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 OR51G1Q8NGK1 321 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 OR2Y1Q8NGV0 311 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 SCARF2Q96GP6 870 aaPredicted RBP8.07□□□□□ -1.12
COL28A1-201ENST00000399429 OXGR1Q96P68 337 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 LRRC3BQ96PB8 259 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TMEM147Q9BVK8 224 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 ZNF430Q9H8G1 570 aaPredicted RBP8.07□□□□□ -1.12
COL28A1-201ENST00000399429 TMEM242Q9NWH2 141 aa8.07□□□□□ -1.12
COL28A1-201ENST00000399429 IFNL4K9M1U5 179 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 B4GALT1P15291 398 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 FUT6P51993 359 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SPEM2Q0P670 501 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 WDR73Q6P4I2 378 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SELENOHQ8IZQ5 122 aaKnown RBP8.06□□□□□ -1.12
COL28A1-201ENST00000399429 RNASEH2CQ8TDP1 164 aaKnown RBP8.06□□□□□ -1.12
COL28A1-201ENST00000399429 CTHRC1Q96CG8 243 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SMIM12Q96EX1 92 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 OR6C1Q96RD1 312 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 VSIRQ9H7M9 311 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 IGKV1D-43A0A0B4J1Z2 117 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PGPEP1LA6NFU8 196 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PDE6DO43924 150 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 ADMP35318 185 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 GPM6AP51674 278 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SPSB3Q6PJ21 355 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 LRRC75AQ8NAA5 344 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 NUDT10Q8NFP7 164 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 IFI44Q8TCB0 444 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 GLRX2Q9NS18 164 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 TMEM250H0YL14 139 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SLC17A3O00476 420 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 NPIPB7O75200 414 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SRIP30626 198 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 LCN2P80188 198 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PRAMEF5Q5TYX0 476 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PRAMEF6Q5VXH4 476 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 LHFPL1Q86WI0 220 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 ZNF519Q8TB69 540 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 NUDT16L1Q9BRJ7 211 aaKnown RBP8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PLA2G2EQ9NZK7 142 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PLXND1Q9Y4D7 1925 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 C1QTNF9BB2RNN3 333 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PROB1E7EW31 1015 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SPINT1O43278 529 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 NUDT3O95989 172 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 CTSBP07858 339 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 SCTP09683 121 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 GFERP55789 205 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 TMEM171Q8WVE6 324 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 PLPPR2Q96GM1 343 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 WNT5BQ9H1J7 359 aa8.06□□□□□ -1.12
COL28A1-201ENST00000399429 FANCMQ8IYD8 2048 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 PCBD1P61457 104 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 HLA-BQ31612 363 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 ANKRD33Q7Z3H0 272 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 TMEM251Q8N6I4 163 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 OR1N1Q8NGS0 311 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 GPR146Q96CH1 333 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 ALKBH3Q96Q83 286 aaPredicted RBP8.05□□□□□ -1.12
COL28A1-201ENST00000399429 TRIB1Q96RU8 372 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 FAM173AQ9BQD7 235 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 WNT16Q9UBV4 365 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 TRAV38-1A0A0B4J264 116 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 M0QZ24 198 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 UBE2V1Q13404 147 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 FHL1Q13642 323 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 SSMEM1Q8WWF3 244 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 SFRP2Q96HF1 295 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 CHRDL1Q9BU40 450 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 CLN8Q9UBY8 286 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 C19orf25Q9UFG5 118 aaPredicted RBP8.05□□□□□ -1.12
COL28A1-201ENST00000399429 A0A1B0GW64 132 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 CTGFP29279 349 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 FCER1GP30273 86 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 DUSP3P51452 185 aaPredicted RBP8.05□□□□□ -1.12
COL28A1-201ENST00000399429 GAGE1Q13065 139 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 RNASE8Q8TDE3 154 aaKnown RBP8.05□□□□□ -1.12
COL28A1-201ENST00000399429 TM4SF19Q96DZ7 209 aa8.05□□□□□ -1.12
COL28A1-201ENST00000399429 CHEK1O14757 476 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms