RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 YPEL2Q96QA6 119 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 TSNAXQ99598 290 aaKnown RBP7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 CCL28Q9NRJ3 127 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 JKAMPQ9P055 326 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 FBXL17Q9UF56 701 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 MSRB2Q9Y3D2 182 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 LSM5Q9Y4Y9 91 aaKnown RBP7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 FAM215AQ9Y5M1 114 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 CUL9Q8IWT3 2517 aa7.35□□□□□ -1.23
SNRNP40-202ENST00000373720 DNAJC13O75165 2243 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 TMEM218A2RU14 115 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 FAM221AA4D161 298 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 A6NLC8 198 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 HMGB3O15347 200 aaKnown RBP7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 MLNRO43193 412 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 LHBP01229 141 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 CELA3BP08861 270 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 GLI4P10075 376 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 SFTPCP11686 197 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 IRF2P14316 349 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 PRDX2P32119 198 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 TAGLN2P37802 199 aaKnown RBP7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 SULT1A1P50225 295 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 FABP6P51161 128 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 DVL1P1P54792 670 aaPredicted RBP7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 CASP6P55212 293 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 TMPRSS3P57727 454 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 SERF2P84101 59 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 FOXF2Q12947 444 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 PMS2P11Q13670 270 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 TESK1Q15569 626 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 SP6Q3SY56 376 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 SPATA46Q5T0L3 261 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 PXDC1Q5TGL8 231 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 SEM1Q6ZVN7 128 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 ASCL5Q7RTU5 278 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 WDR86Q86TI4 376 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 C1orf87Q8N0U7 546 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 PUSL1Q8N0Z8 303 aaKnown RBP7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 GCSAMQ8N6F7 178 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 DMBX1Q8NFW5 382 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 PINX1Q96BK5 328 aaKnown RBP7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 ADTRPQ96IZ2 230 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 C11orf1Q9H5F2 150 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 LINC00574Q9H8X3 128 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 TINAGQ9UJW2 476 aa7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 CARHSP1Q9Y2V2 147 aaKnown RBP7.34□□□□□ -1.23
SNRNP40-202ENST00000373720 ZNF407Q9C0G0 2248 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 TTC28Q96AY4 2481 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 K7N7A8 449 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 NDUFA2O43678 99 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 LILRA1O75019 489 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 IFNA5P01569 189 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 RCC1P18754 421 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 MPV17P39210 176 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 TLE4Q04727 773 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 RSPO4Q2I0M5 234 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 AARDQ4LEZ3 155 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 BEX5Q5H9J7 111 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 KRBOX4Q5JUW0 171 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 RPL7L1Q6DKI1 246 aaKnown RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 ZNF474Q6S9Z5 364 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 MEX3BQ6ZN04 569 aaKnown RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 Q6ZPA2 131 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 TMEM252Q8N6L7 170 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 NAXEQ8NCW5 288 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 OR1S2Q8NGQ3 325 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 OR52E5Q8NH55 327 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 C17orf50Q8WW18 174 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 TMED6Q8WW62 240 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 IL1F10Q8WWZ1 152 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 S100PBPQ96BU1 408 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 RBMXL1Q96E39 390 aaKnown RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 SDSLQ96GA7 329 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 CXorf58Q96LI9 332 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 VKORC1Q9BQB6 163 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 PSMG3Q9BT73 122 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 EGLN1Q9GZT9 426 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 OPN3Q9H1Y3 402 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 RNF7Q9UBF6 113 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 MED12LQ86YW9 2145 aa7.33□□□□□ -1.24
SNRNP40-202ENST00000373720 TRAV1-1A0A0B4J248 108 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 NKX2-6A6NCS4 301 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 MSGN1A6NI15 193 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 SIRPB1O00241 398 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 F2RL2O00254 374 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 DLL1O00548 723 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 ABCD4O14678 606 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 HSD17B6O14756 317 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 RAB29O14966 203 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 ADAM20O43506 726 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 SYNGR2O43760 224 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 ZNF737O75373 536 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 CLDN14O95500 239 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 TSPAN15O95858 294 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 SCGB1D2O95969 90 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 MBP02144 154 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 GABRA2P47869 451 aa7.32□□□□□ -1.24
SNRNP40-202ENST00000373720 TDGF1P3P51864 188 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms