RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 GTF3C1Q12789 2109 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 FADS1O60427 444 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 GCSHP23434 173 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 NDUFA6P56556 154 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 Q8NA96 180 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 CMC2Q9NRP2 79 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 TAS2R4Q9NYW5 299 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 ZIC3O60481 467 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 GGCTO75223 188 aaKnown RBP7.13□□□□□ -1.27
HMGB1-203ENST00000341423 ANOS1P23352 680 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 C1QL2Q7Z5L3 287 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 FAM216BQ8N7L0 139 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 DERL3Q96Q80 235 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 ATPIF1Q9UII2 106 aa7.13□□□□□ -1.27
HMGB1-203ENST00000341423 ADAM10O14672 748 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 AKAIN1P0CW23 69 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 MGST1P10620 155 aaKnown RBP7.12□□□□□ -1.27
HMGB1-203ENST00000341423 PIGPP57054 158 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 ADORA2A-AS1P86434 159 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 ZNF85Q03923 595 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TMEM236Q5W0B7 351 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 AKIP1Q9NQ31 210 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 FLRT3Q9NZU0 649 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 PIKFYVEQ9Y2I7 2098 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TRBV4-1A0A0J9YWV2 114 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 SMIM30A4D0T7 59 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TGFBR3LH3BV60 316 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 PRAF2O60831 178 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 HOXB5P09067 269 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 FCGR2CP31995 323 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 CD81P60033 236 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 EXOSC2Q13868 293 aaKnown RBP7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TUSC1Q2TAM9 212 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 MST1LQ2TV78 715 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 SPANXN5Q5MJ07 72 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 DTD1Q8TEA8 209 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 MYO9AB2RTY4 2548 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 PEX11BO96011 259 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 CFDP00746 253 aaPredicted RBP7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TDGF1P13385 188 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 WNT5AP41221 380 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TCTE3Q8IZS6 198 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 PACRGLQ8N7B6 248 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 MUS81Q96NY9 551 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 THSD7BQ9C0I4 1608 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 COL24A1Q17RW2 1714 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 IGHV1-18A0A0C4DH31 117 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 CRXO43186 299 aaPredicted RBP7.12□□□□□ -1.27
HMGB1-203ENST00000341423 IL6RP08887 468 aaPredicted RBP7.12□□□□□ -1.27
HMGB1-203ENST00000341423 G6PCP35575 357 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 HMGA2P52926 109 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 OR2B8PP59922 312 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 ZFAND6Q6FIF0 208 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 TPRX1Q8N7U7 411 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 OR1B1Q8NGR6 318 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 OR2G2Q8NGZ5 317 aa7.12□□□□□ -1.27
HMGB1-203ENST00000341423 FXYD6-FXYD2A0A087WZ82 144 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 KISS1Q15726 138 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 FAM3DQ96BQ1 224 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 FXYD6Q9H0Q3 95 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ZC3H12DA2A288 527 aaKnown RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 INSL3P51460 131 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 TOR2AQ5JU69 321 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 OTOSQ8NHW6 89 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 C11orf54Q9H0W9 315 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 CHEK1O14757 476 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 GP9P14770 177 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 EVI2AP22794 236 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 OPCMLQ14982 345 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 CEACAM21Q3KPI0 293 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 TMEM256Q8N2U0 113 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 MMP28Q9H239 520 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ETV7Q9Y603 341 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ATAD5Q96QE3 1844 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 IGKV3OR2-268A0A0C4DH90 116 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 PMELP40967 661 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 HNRNPA0Q13151 305 aaKnown RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ZNF474Q6S9Z5 364 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 METAP1DQ6UB28 335 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ATG4DQ86TL0 474 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 SLC26A10Q8NG04 563 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 HGDQ93099 445 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 MEGF9Q9H1U4 602 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 RPRMQ9NS64 109 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 LINC00527Q9UJ94 153 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ARFGEF3Q5TH69 2177 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 AREGP15514 252 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 RAB5AP20339 215 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 SAA4P35542 130 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 RPL8P62917 257 aaKnown RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 HIST1H1AQ02539 215 aaPredicted RBP7.11□□□□□ -1.27
HMGB1-203ENST00000341423 ELOBQ15370 118 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 C10orf105Q8TEF2 133 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 NEUROG1Q92886 237 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 VOPP1Q96AW1 172 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 TAMM41Q96BW9 452 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 MGLLQ99685 303 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 NIPSNAP1Q9BPW8 284 aa7.11□□□□□ -1.27
HMGB1-203ENST00000341423 TMPRSS13Q9BYE2 586 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms