RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CASTOR1Q8WTX7 329 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 SECTM1Q8WVN6 248 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 RTN4IP1Q8WWV3 396 aaPredicted RBP11.71□□□□□ -0.54
SS18-201ENST00000269137 ASB13Q8WXK3 278 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 CORO2AQ92828 525 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 GALNT14Q96FL9 552 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 HYLS1Q96M11 299 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 RAB9BQ9NP90 201 aa11.71□□□□□ -0.54
SS18-201ENST00000269137 SLC25A10Q9UBX3 287 aaPredicted RBP11.71□□□□□ -0.54
SS18-201ENST00000269137 DBX1A6NMT0 343 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 LYNX1G3V0Z9 82 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 GPR31O00270 319 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 ADAM20O43506 726 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 SLC22A5O76082 557 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 IFNA2P01563 188 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 GIPP09681 153 aaPredicted RBP11.7□□□□□ -0.54
SS18-201ENST00000269137 LYNX1P0DP58 116 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 SSTR5P35346 364 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 LUMP51884 338 aaPredicted RBP11.7□□□□□ -0.54
SS18-201ENST00000269137 LDLRAD3Q86YD5 345 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 SLC7A5P1Q8MH63 180 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 OR10V1Q8NGI7 309 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 NAA60Q9H7X0 242 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 LINC00574Q9H8X3 128 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 PIPOXQ9P0Z9 390 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 KCNIP3Q9Y2W7 256 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 AKAP6Q13023 2319 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 TRGV10A0A0A0MS01 117 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 TEX13DA0A0J9YY54 714 aaPredicted RBP11.7□□□□□ -0.54
SS18-201ENST00000269137 F2RL2O00254 374 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 IGHV2-70P01814 119 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 TLE4Q04727 773 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 MEF2CQ06413 473 aaPredicted RBP11.7□□□□□ -0.54
SS18-201ENST00000269137 PHLDA2Q53GA4 152 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 NLRC3Q7RTR2 1065 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 COQ8AQ8NI60 647 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 GON7Q9BXV9 100 aa11.7□□□□□ -0.54
SS18-201ENST00000269137 DCHS2Q6V1P9 2916 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 GOSR2O14653 212 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 MPPED1O15442 326 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 NDUFB3O43676 98 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 DAOP14920 347 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 H2BFSP57053 126 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 RAP2BP61225 183 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 SLC9A3R2Q15599 337 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 ANKRD55Q3KP44 614 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 LRRC10Q5BKY1 277 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 LAMTOR1Q6IAA8 161 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 LYPD2Q6UXB3 125 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 ZNF818PQ6ZRF7 136 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 CMTM1Q8IZ96 169 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 BVESQ8NE79 360 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 OR52L2PQ8NGH6 319 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 OR5M8Q8NGP6 311 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 RFESDQ8TAC1 157 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 FAM216AQ8WUB2 273 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 NINJ1Q92982 152 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 RANBP3Q9H6Z4 567 aaPredicted RBP11.69□□□□□ -0.54
SS18-201ENST00000269137 OR2S2Q9NQN1 319 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 CCL28Q9NRJ3 127 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 CALYQ9NYX4 217 aa11.69□□□□□ -0.54
SS18-201ENST00000269137 KBTBD11-OT1A0A1B0GTJ5 212 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 hADV38S2A0JD32 116 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 FCN3O75636 299 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 NDUFB7P17568 137 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 SRSF4Q08170 494 aaKnown RBP11.68□□□□□ -0.54
SS18-201ENST00000269137 C17orf58Q2M2W7 97 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 LY6G6FQ5SQ64 297 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 LIN54Q6MZP7 749 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 KCTD9Q7L273 389 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 TCF23Q7RTU1 214 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 AKR1E2Q96JD6 320 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 SUCNR1Q9BXA5 334 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 PARP12Q9H0J9 701 aaKnown RBP11.68□□□□□ -0.54
SS18-201ENST00000269137 LPAR3Q9UBY5 353 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 CLN8Q9UBY8 286 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 JPT1Q9UK76 154 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 UBE2J1Q9Y385 318 aaPredicted RBP11.68□□□□□ -0.54
SS18-201ENST00000269137 LINC00312Q9Y6C7 94 aa11.68□□□□□ -0.54
SS18-201ENST00000269137 ZNF729A6NN14 1252 aaPredicted RBP11.67□□□□□ -0.54
SS18-201ENST00000269137 OVOL3O00110 214 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 WNT2P09544 360 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 S100GP29377 79 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 TMEM33P57088 247 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 LOXL3P58215 753 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 TMEM187Q14656 261 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 GNMTQ14749 295 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 MSMO1Q15800 293 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 TMEM30BQ3MIR4 351 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 FGFRL1Q8N441 504 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 RAB1CQ92928 201 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 TIMD4Q96H15 378 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 PLEKHF2Q9H8W4 249 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 CHODLQ9H9P2 273 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 RAB18Q9NP72 206 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 TAS2R3Q9NYW6 316 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 CTSZQ9UBR2 303 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 DOCK11Q5JSL3 2073 aa11.67□□□□□ -0.54
SS18-201ENST00000269137 MEX3AA1L020 520 aaKnown RBP11.67□□□□□ -0.54
SS18-201ENST00000269137 CLEC18AA5D8T8 446 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms