RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 C12orf4Q9NQ89 552 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.79□□□□□ -0.04
CLN3-259ENST00000637551 ETV7Q9Y603 341 aa14.79□□□□□ -0.04
CLN3-259ENST00000637551 TENM1Q9UKZ4 2725 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 SERPINE3A8MV23 424 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 C12orf77C9JDV5 145 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 BUB1B-PAK6H3BSN5 160 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 J3QR06 171 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 GPR137BO60478 399 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 LOXL3P58215 753 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 HES5Q5TA89 166 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 C16orf82Q7Z2V1 217 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 OR4F5Q8NH21 305 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 SULT4A1Q9BR01 284 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 NICN1Q9BSH3 213 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 GFOD1Q9NXC2 390 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 JPT1Q9UK76 154 aa14.78□□□□□ -0.04
CLN3-259ENST00000637551 A0A0A6YYD4 124 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 A0A0A6YYH2 397 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 A0A1W2PRD5 423 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 A0A1W2PRF3 423 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 A0A1W2PRM7 423 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 MEX3AA1L020 520 aaKnown RBP14.77□□□□□ -0.05
CLN3-259ENST00000637551 FAM181BA6NEQ2 426 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 A6NJ64 397 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 LY6LH3BQJ8 138 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 AIREO43918 545 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 OMGP23515 440 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 BRS3P32247 399 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 SDC2P34741 201 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 GDNFP39905 211 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 ZNF137PP52743 207 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 CLDN12P56749 244 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 PRB3Q04118 309 aaPredicted RBP14.77□□□□□ -0.05
CLN3-259ENST00000637551 MADCAM1Q13477 382 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 HMGN3Q15651 99 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 NKAPLQ5M9Q1 402 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 Q6ZTK2 550 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 C6orf201Q7Z4U5 140 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 LHFPL4Q7Z7J7 247 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 OR13F1Q8NGS4 319 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 NDNFQ8TB73 568 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 OCSTAMPQ9BR26 566 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 MRPS26Q9BYN8 205 aaKnown RBP14.77□□□□□ -0.05
CLN3-259ENST00000637551 ABCB10Q9NRK6 738 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 ING3Q9NXR8 418 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 PSG11Q9UQ72 335 aa14.77□□□□□ -0.05
CLN3-259ENST00000637551 LOC100506127A0A0U1RQW1 187 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 H3BUX3 64 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 RAB27BO00194 218 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 TXNL1O43396 289 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 RGS11O94810 467 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 NFYBP25208 207 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 RAB7AP51149 207 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 TMEM50BP56557 158 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 SRSF2Q01130 221 aaKnown RBP14.76□□□□□ -0.05
CLN3-259ENST00000637551 SRSF7Q16629 238 aaKnown RBP eCLIP14.76□□□□□ -0.05
CLN3-259ENST00000637551 C11orf88Q6PI97 169 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 BRICD5Q6PL45 260 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 OR8H3Q8N146 312 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 OR10R2Q8NGX6 335 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 C17orf50Q8WW18 174 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 RAB3CQ96E17 227 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 GHITMQ9H3K2 345 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 TAF9BQ9HBM6 251 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 ABRACLQ9P1F3 81 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 TCF19Q9Y242 345 aa14.76□□□□□ -0.05
CLN3-259ENST00000637551 UBE2QL1A1L167 161 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 SDCBPO00560 298 aaPredicted RBP14.75□□□□□ -0.05
CLN3-259ENST00000637551 ITGB1BP1O14713 200 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 SOCS1O15524 211 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 TSPAN9O75954 239 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 HBZP02008 142 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 SMIM18P0DKX4 95 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 IL3RAP26951 378 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 MNDAP41218 407 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 VEGFCP49767 419 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 SSX2Q16385 188 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 LDLRAD2Q5SZI1 272 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 TPTE2P1Q5T6R2 138 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 DHRS7BQ6IAN0 325 aaPredicted RBP14.75□□□□□ -0.05
CLN3-259ENST00000637551 OR4K15Q8NH41 348 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 PIFOQ8TCI5 191 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 GALMQ96C23 342 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 DUX5Q96PT3 197 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 FAAP24Q9BTP7 215 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 KCNK15Q9H427 330 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 C16orf95Q9H693 158 aa14.75□□□□□ -0.05
CLN3-259ENST00000637551 KCNAB3O43448 404 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 YPEL1O60688 119 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 LPLP06858 475 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 HIST1H1DP16402 221 aaKnown RBP14.74□□□□□ -0.05
CLN3-259ENST00000637551 RCC1P18754 421 aaPredicted RBP14.74□□□□□ -0.05
CLN3-259ENST00000637551 ZNF816Q0VGE8 651 aaPredicted RBP14.74□□□□□ -0.05
CLN3-259ENST00000637551 HABP2Q14520 560 aaPredicted RBP14.74□□□□□ -0.05
CLN3-259ENST00000637551 AWAT1Q58HT5 328 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 C12orf54Q6X4T0 127 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 Q6ZS49 121 aa14.74□□□□□ -0.05
CLN3-259ENST00000637551 SLC25A48Q6ZT89 311 aaKnown RBP14.74□□□□□ -0.05
CLN3-259ENST00000637551 THNSL2Q86YJ6 484 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms