RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 NEDD8Q15843 81 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 HLA-DRB5Q30154 266 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 TRAT1Q6PIZ9 186 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 LIAT1Q6ZQX7 453 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 SLC16A12Q6ZSM3 486 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 OR51D1Q8NGF3 324 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 OR4K15Q8NH41 348 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 MMP28Q9H239 520 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 MMP27Q9H306 513 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 VCX3AQ9NNX9 186 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 PITPNC1Q9UKF7 332 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 SSR3Q9UNL2 185 aa12.54□□□□□ -0.4
LINC00339-209ENST00000635450 F2RL2O00254 374 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 SPINT2O43291 252 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 TNFAIP8O95379 198 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 CHATP28329 748 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 BLVRBP30043 206 aaPredicted RBP12.53□□□□□ -0.4
LINC00339-209ENST00000635450 FGF9P31371 208 aaPredicted RBP12.53□□□□□ -0.4
LINC00339-209ENST00000635450 RAB13P51153 203 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 CLDN12P56749 244 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 QRFPP83859 136 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 C2orf76Q3KRA6 126 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 PDLIM3Q53GG5 364 aaPredicted RBP12.53□□□□□ -0.4
LINC00339-209ENST00000635450 HES5Q5TA89 166 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 C11orf44Q8N8P7 122 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 OR52M1Q8NGK5 317 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 FAM3DQ96BQ1 224 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 NICN1Q9BSH3 213 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 PLEKHJ1Q9NW61 149 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 KCNIP1Q9NZI2 227 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 STEAP1Q9UHE8 339 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 PLXNB1O43157 2135 aa12.53□□□□□ -0.4
LINC00339-209ENST00000635450 BUB1B-PAK6H3BSN5 160 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 J3QR06 171 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 SDCBPO00560 298 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-209ENST00000635450 TIMM23O14925 209 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 IGHV3-7P01780 117 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 BRS3P32247 399 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 GNG10P50151 68 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 DYNLT3P51808 116 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 EFNB2P52799 333 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 HABP2Q14520 560 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-209ENST00000635450 TMEM30BQ3MIR4 351 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 CCBE1Q6UXH8 406 aaPredicted RBP12.52□□□□□ -0.41
LINC00339-209ENST00000635450 C1QL4Q86Z23 238 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 GAPTQ8N292 157 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 LEAP2Q969E1 77 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 SULT4A1Q9BR01 284 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 FAAP24Q9BTP7 215 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 LPAR5Q9H1C0 372 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 TXNL4BQ9NX01 149 aaKnown RBP12.52□□□□□ -0.41
LINC00339-209ENST00000635450 PSG11Q9UQ72 335 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 TCF19Q9Y242 345 aa12.52□□□□□ -0.41
LINC00339-209ENST00000635450 A0A087WXM4 84 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 OOSP1A8MZH6 123 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 C12orf77C9JDV5 145 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 C15orf65H3BRN8 121 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 MNDAP41218 407 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 VEGFCP49767 419 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 OR10A3P58181 314 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 CCDC144NLQ6NUI1 221 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 C6orf201Q7Z4U5 140 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 TMEM219Q86XT9 240 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 PRR18Q8N4B5 295 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 DTX3Q8N9I9 347 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 TSPAN14Q8NG11 270 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 OR10X1Q8NGY0 326 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 FAM110DQ8TAY7 271 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-209ENST00000635450 UBALD1Q8TB05 177 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 RPEQ96AT9 228 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 CHMP1AQ9HD42 196 aaPredicted RBP12.51□□□□□ -0.41
LINC00339-209ENST00000635450 FBLN5Q9UBX5 448 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 RAB22AQ9UL26 194 aa12.51□□□□□ -0.41
LINC00339-209ENST00000635450 A0A0A6YYD4 124 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 IGHV3-43A0A0B4J1X8 118 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 TMEM272A0A1B0GTI8 110 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 SHISA3A0PJX4 238 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 IFITM5A6NNB3 132 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 IGHV3-43DP0DP04 118 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 CD36P16671 472 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 RCC1P18754 421 aaPredicted RBP12.5□□□□□ -0.41
LINC00339-209ENST00000635450 MADCAM1Q13477 382 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 UTF1Q5T230 341 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 TPTE2P1Q5T6R2 138 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 ZNF554Q86TJ5 538 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 TPRA1Q86W33 373 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 FAM89BQ8N5H3 189 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 KLHDC1Q8N7A1 406 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 OR56B1Q8NGI3 324 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 OR4C13Q8NGP0 309 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 MRPL30Q8TCC3 161 aaKnown RBP12.5□□□□□ -0.41
LINC00339-209ENST00000635450 TOMM40LQ969M1 308 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 KCTD7Q96MP8 289 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 NPFFR1Q9GZQ6 430 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 OR51E2Q9H255 320 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 ZNF702PQ9H963 129 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 TAF9BQ9HBM6 251 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 MBNL3Q9NUK0 354 aaKnown RBP12.5□□□□□ -0.41
LINC00339-209ENST00000635450 GFOD1Q9NXC2 390 aa12.5□□□□□ -0.41
LINC00339-209ENST00000635450 GNG12Q9UBI6 72 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms