RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ZNF554Q86TJ5 538 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 MRPL30Q8TCC3 161 aaKnown RBP16.74■□□□□ 0.27
CLN3-240ENST00000631023 MBNL3Q9NUK0 354 aaKnown RBP16.74■□□□□ 0.27
CLN3-240ENST00000631023 PSG11Q9UQ72 335 aa16.74■□□□□ 0.27
CLN3-240ENST00000631023 TRIM64CA6NLI5 447 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 C12orf77C9JDV5 145 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 RAB6AP20340 208 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 SDC2P34741 201 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 AWAT1Q58HT5 328 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 DHRS7BQ6IAN0 325 aaPredicted RBP16.73■□□□□ 0.27
CLN3-240ENST00000631023 Q6ZTK2 550 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 NR2C2APQ86WQ0 139 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 OR4F5Q8NH21 305 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 MMP28Q9H239 520 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 RIMS4Q9H426 269 aaPredicted RBP16.73■□□□□ 0.27
CLN3-240ENST00000631023 CHMP1AQ9HD42 196 aaPredicted RBP16.73■□□□□ 0.27
CLN3-240ENST00000631023 RAB18Q9NP72 206 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 C1RLQ9NZP8 487 aa16.73■□□□□ 0.27
CLN3-240ENST00000631023 SMIM30A4D0T7 59 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 METTL21EPA6NDL7 271 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 F2RL2O00254 374 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 DYNLT3P51808 116 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 LY6EQ16553 131 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 LIAT1Q6ZQX7 453 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 PRR18Q8N4B5 295 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 C3orf56Q8N813 242 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 LEAP2Q969E1 77 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 PTX4Q96A99 478 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 CENPOQ9BU64 300 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 TAF9BQ9HBM6 251 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 GFOD1Q9NXC2 390 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 TENM1Q9UKZ4 2725 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 A0A1B0GUS0 222 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 AIREO43918 545 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 NDUFA7O95182 113 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 IGHV3-7P01780 117 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 HBZP02008 142 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 RAG2P55895 527 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 UTF1Q5T230 341 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 CCDC144NLQ6NUI1 221 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 UBALD1Q8TB05 177 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 BEX1Q9HBH7 125 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 PITPNC1Q9UKF7 332 aa16.72■□□□□ 0.27
CLN3-240ENST00000631023 FOXI3A8MTJ6 420 aaPredicted RBP16.71■□□□□ 0.27
CLN3-240ENST00000631023 OOSP1A8MZH6 123 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 SLC2A2P11168 524 aaPredicted RBP16.71■□□□□ 0.27
CLN3-240ENST00000631023 BRS3P32247 399 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 GNG10P50151 68 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 RAB13P51153 203 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 TMEM50BP56557 158 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 LOXL3P58215 753 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 MXD1Q05195 221 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 Q3ZCU0 254 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 OR10X1Q8NGY0 326 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 PIFOQ8TCI5 191 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 YIPF6Q96EC8 236 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 ARHGAP5-AS1Q96IT6 56 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 RNF167Q9H6Y7 350 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 GNG12Q9UBI6 72 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 DAPK2Q9UIK4 370 aa16.71■□□□□ 0.27
CLN3-240ENST00000631023 A0A0B4J203 849 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 LY6LH3BQJ8 138 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 NAPSAO96009 420 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 MADCAM1Q13477 382 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 TPTE2P1Q5T6R2 138 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 SFXN4Q6P4A7 337 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 MOB1BQ7L9L4 216 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 C8orf31Q8N9H6 132 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 OR1L1Q8NH94 360 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 TAF15Q92804 592 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-240ENST00000631023 RPEQ96AT9 228 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 GALMQ96C23 342 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 RAB3CQ96E17 227 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 PECRQ9BY49 303 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 ABRACLQ9P1F3 81 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 AK3Q9UIJ7 227 aa16.7■□□□□ 0.26
CLN3-240ENST00000631023 IGHV3-43A0A0B4J1X8 118 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 POM121CA8CG34 1229 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 IGHV3-43DP0DP04 118 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 MNDAP41218 407 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 PLA2G7Q13093 441 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 SETD6Q8TBK2 473 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 CYYR1Q96J86 154 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 OR2S2Q9NQN1 319 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 MGAT4AQ9UM21 535 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 TCF19Q9Y242 345 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 MMP24Q9Y5R2 645 aa16.69■□□□□ 0.26
CLN3-240ENST00000631023 EFNB2P52799 333 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 MRPS15P82914 257 aaKnown RBP16.68■□□□□ 0.26
CLN3-240ENST00000631023 RELBQ01201 579 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 LINC00311Q8N616 119 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 DTX3Q8N9I9 347 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 OR10R2Q8NGX6 335 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 TOMM40LQ969M1 308 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 CMSS1Q9BQ75 279 aaKnown RBP16.68■□□□□ 0.26
CLN3-240ENST00000631023 ATG5Q9H1Y0 275 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 TRBV6-6A0A0A6YYG2 114 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 CLEC2LP0C7M8 214 aa16.68■□□□□ 0.26
CLN3-240ENST00000631023 MDKP21741 143 aaPredicted RBP16.68■□□□□ 0.26
CLN3-240ENST00000631023 IL3RAP26951 378 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms