RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 EBNA1BP2Q99848 306 aaKnown RBP0.32□□□□□ -2.36
SCN1A-208ENST00000625916 MND1Q9BWT6 205 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 TUBG2Q9NRH3 451 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 VAPAQ9P0L0 249 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 PRO2289Q9P1D8 64 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 RABL2BQ9UNT1 228 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 ANGPT4Q9Y264 503 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 TBL2Q9Y4P3 447 aaKnown RBP0.32□□□□□ -2.36
SCN1A-208ENST00000625916 COL6A6A6NMZ7 2263 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 SYNE2Q8WXH0 6885 aaKnown RBP0.32□□□□□ -2.36
SCN1A-208ENST00000625916 PHLPP2Q6ZVD8 1323 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 TRAV8-2A0A0B4J237 113 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 A0A1B0GTQ1 180 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 DHRS12A0PJE2 317 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 A8MUN3 132 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 B4DEV8 164 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 H3BPC8 53 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 UBFD1O14562 309 aaKnown RBP0.31□□□□□ -2.36
SCN1A-208ENST00000625916 PRMT5O14744 637 aaPredicted RBP0.31□□□□□ -2.36
SCN1A-208ENST00000625916 FGF16O43320 207 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 LY6HO94772 140 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 STAG3L3P0CL85 134 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 SPNP16150 400 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 SLC25A16P16260 332 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 PTMSP20962 102 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 PSMA1P25786 263 aaKnown RBP0.31□□□□□ -2.36
SCN1A-208ENST00000625916 CALRP27797 417 aaKnown RBP0.31□□□□□ -2.36
SCN1A-208ENST00000625916 MP68P56378 58 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 DEFA6Q01524 100 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF90Q03938 601 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 PRDX1Q06830 199 aaKnown RBP0.31□□□□□ -2.36
SCN1A-208ENST00000625916 BSPH1Q075Z2 132 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 GUSBP1Q15486 140 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 DGAT2L6Q6ZPD8 337 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 GLT6D1Q7Z4J2 308 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 FAM19A3Q7Z5A8 133 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 TMCO2Q7Z6W1 182 aaPredicted RBP0.31□□□□□ -2.36
SCN1A-208ENST00000625916 SLC35F6Q8N357 371 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 OR51L1Q8NGJ5 315 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 CDKL2Q92772 493 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 COPS4Q9BT78 406 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 FAAP24Q9BTP7 215 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 EBPLQ9BY08 206 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 TM6SF2Q9BZW4 377 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 RGCCQ9H4X1 137 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 XKR8Q9H6D3 395 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 HAUS4Q9H6D7 363 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 CRLF2Q9HC73 371 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 CLUHO75153 1309 aa0.31□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV3-7A0A075B6H7 116 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 C11orf86A6NJI1 115 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 C2orf74A8MZ97 194 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 FBP1P09467 338 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 IGHV3-30-3P0DP02 117 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ATF1P18846 271 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 PEX19P40855 299 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 GABARAPL2P60520 117 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 SLC35A2P78381 396 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 BAXQ07812 192 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 PLCXD2Q0VAA5 305 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 MAPK14Q16539 360 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 MRPL51Q4U2R6 128 aaKnown RBP0.3□□□□□ -2.36
SCN1A-208ENST00000625916 HSP90AA4PQ58FG1 418 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 LAMTOR1Q6IAA8 161 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ZBTB8OSQ8IWT0 167 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 OR9I1Q8NGQ6 314 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 OR6K2Q8NGY2 324 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 OR6N2Q8NGY6 317 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 DTD1Q8TEA8 209 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 GALMQ96C23 342 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ZMYND19Q96E35 227 aaPredicted RBP0.3□□□□□ -2.36
SCN1A-208ENST00000625916 UPK3BQ9BT76 320 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF426Q9BUY5 554 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 CHID1Q9BWS9 393 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF471Q9BX82 626 aaPredicted RBP0.3□□□□□ -2.36
SCN1A-208ENST00000625916 C16orf95Q9H693 158 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ANKHQ9HCJ1 492 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 SCML1Q9UN30 329 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 FIS1Q9Y3D6 152 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 ALG5Q9Y673 324 aa0.3□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV2D-26A0A0A0MRZ7 120 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 TMEM235A6NFC5 223 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 C9J4A7 227 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 BOLA2-SMG1P6H3BVE0 249 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 PSMD11O00231 422 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 UBDO15205 165 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 ZW10O43264 779 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 GNRH2O43555 120 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 GMDSO60547 372 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 GIMD1P0DJR0 217 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 PPP1CCP36873 323 aaKnown RBP0.29□□□□□ -2.36
SCN1A-208ENST00000625916 DNASE1L1P49184 302 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 RPL14P50914 215 aaKnown RBP0.29□□□□□ -2.36
SCN1A-208ENST00000625916 PDK2Q15119 407 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 PSG3Q16557 428 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF791Q3KP31 576 aaPredicted RBP0.29□□□□□ -2.36
SCN1A-208ENST00000625916 HES3Q5TGS1 186 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 HBMQ6B0K9 141 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 EBLN2Q6P2I7 272 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 RASL11AQ6T310 242 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms