RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 UCHL1P09936 223 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 CD28P10747 220 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 SRMP19623 302 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 FUT3P21217 361 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 PSMA1P25786 263 aaKnown RBP11.82□□□□□ -0.52
LINC00643-205ENST00000623219 LOXL3P58215 753 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 DEFA6Q01524 100 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 ZNF816Q0VGE8 651 aaPredicted RBP11.82□□□□□ -0.52
LINC00643-205ENST00000623219 MLLT11Q13015 90 aaPredicted RBP11.82□□□□□ -0.52
LINC00643-205ENST00000623219 TRAM1Q15629 374 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 ABCA11PQ4W5N1 156 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 C1orf100Q5SVJ3 147 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 SYT6Q5T7P8 510 aaPredicted RBP11.82□□□□□ -0.52
LINC00643-205ENST00000623219 SIGIRRQ6IA17 410 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 PRSS48Q7RTY5 328 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 CEACAM19Q7Z692 300 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 NDUFA11Q86Y39 141 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 LINC00311Q8N616 119 aa11.82□□□□□ -0.52
LINC00643-205ENST00000623219 C12orf77C9JDV5 145 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 SPINT2O43291 252 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 KCNAB3O43448 404 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 MPIG6BO95866 241 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 OPN1MWP04001 364 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 AMY1AP04745 511 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 AMY2AP04746 511 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 HSMCR30P0CW71 290 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 OPN1MW2P0DN77 364 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 OPN1MW3P0DN78 364 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 TPBGQ13641 420 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 DIAPH2-AS1Q14236 149 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 HIST2H2BDQ6DRA6 164 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 ZNF554Q86TJ5 538 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 DRAM1Q8N682 238 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 OR4K15Q8NH41 348 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 UBALD1Q8TB05 177 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 TMEM59Q9BXS4 323 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 CCDC90BQ9GZT6 254 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 MBNL3Q9NUK0 354 aaKnown RBP11.81□□□□□ -0.52
LINC00643-205ENST00000623219 BLOC1S6Q9UL45 172 aa11.81□□□□□ -0.52
LINC00643-205ENST00000623219 IGHV3-43A0A0B4J1X8 118 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 A0A1W2PPE3 182 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 CCRL2O00421 344 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 SLC22A1O15245 554 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 LPLP06858 475 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 IGHV3-43DP0DP04 118 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 VSIG8P0DPA2 414 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 CPEP16870 476 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 TMEM11P17152 192 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 IL3RAP26951 378 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 HTR2CP28335 458 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 VHLP40337 213 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 RPS27AP62979 156 aaKnown RBP11.8□□□□□ -0.52
LINC00643-205ENST00000623219 HES1Q14469 280 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 TBCEQ15813 527 aaPredicted RBP11.8□□□□□ -0.52
LINC00643-205ENST00000623219 IZUMO1Q8IYV9 350 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 OR6M1Q8NGM8 313 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 CNBD2Q96M20 576 aa11.8□□□□□ -0.52
LINC00643-205ENST00000623219 IGHV1-3A0A0C4DH29 117 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 UBE2QL1A1L167 161 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 FGF16O43320 207 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 TXNL1O43396 289 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 ARL6IP5O75915 188 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 BPNT1O95861 308 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 IGKV1D-33P01593 117 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 IGKV1-33P01594 117 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 HBZP02008 142 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 GAPDHP04406 335 aaKnown RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 CD37P11049 281 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 RCC1P18754 421 aaPredicted RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 CHATP28329 748 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 ZNF137PP52743 207 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 RPS25P62851 125 aaKnown RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 EMX1Q04741 257 aaPredicted RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 UNC119Q13432 240 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 NSUN5P1Q3KNT7 163 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 TMEM91Q6ZNR0 172 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 SLC25A48Q6ZT89 311 aaKnown RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 PRR18Q8N4B5 295 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 C5orf56Q8N8D9 126 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 ZNF439Q8NDP4 499 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 OR4F17Q8NGA8 305 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 KCNG3Q8TAE7 436 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 MRPL30Q8TCC3 161 aaKnown RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 TMEM203Q969S6 136 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 NEDD4LQ96PU5 975 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 OR4F4Q96R69 305 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 CITED2Q99967 270 aaPredicted RBP11.79□□□□□ -0.52
LINC00643-205ENST00000623219 TM2D1Q9BX74 207 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 GNG12Q9UBI6 72 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 RAB26Q9ULW5 256 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 TGP01266 2768 aa11.79□□□□□ -0.52
LINC00643-205ENST00000623219 PRKDCP78527 4128 aaKnown RBP11.78□□□□□ -0.52
LINC00643-205ENST00000623219 ADARB2-AS1A8MUL3 147 aa11.78□□□□□ -0.52
LINC00643-205ENST00000623219 TMEM14DPA8MWL7 114 aa11.78□□□□□ -0.52
LINC00643-205ENST00000623219 EBI3Q14213 229 aa11.78□□□□□ -0.52
LINC00643-205ENST00000623219 PDLIM3Q53GG5 364 aaPredicted RBP11.78□□□□□ -0.52
LINC00643-205ENST00000623219 NKAPLQ5M9Q1 402 aa11.78□□□□□ -0.52
LINC00643-205ENST00000623219 OR10K2Q6IF99 312 aa11.78□□□□□ -0.52
LINC00643-205ENST00000623219 ZNF367Q7RTV3 350 aa11.78□□□□□ -0.52
LINC00643-205ENST00000623219 LYG1Q8N1E2 194 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms