RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RAB11BQ15907 218 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 C6orf183Q5T699 404 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 Q8N2B8 174 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 MRPL30Q8TCC3 161 aaKnown RBP12.96□□□□□ -0.33
TRIM28-213ENST00000598355 ARL11Q969Q4 196 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 ABCB10Q9NRK6 738 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 GFOD1Q9NXC2 390 aa12.96□□□□□ -0.33
TRIM28-213ENST00000598355 AMMECR1Q9Y4X0 333 aaPredicted RBP12.96□□□□□ -0.33
TRIM28-213ENST00000598355 PKD1L1Q8TDX9 2849 aa12.96□□□□□ -0.34
TRIM28-213ENST00000598355 NBEAL1Q6ZS30 2694 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 A0A1W2PPI3 338 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 TOR1AO14656 332 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 NAPSAO96009 420 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 RCC1P18754 421 aaPredicted RBP12.95□□□□□ -0.34
TRIM28-213ENST00000598355 RANBP1P43487 201 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 EFNB2P52799 333 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 KRTAP10-3P60369 221 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 P2RY14Q15391 338 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 FBLN7Q53RD9 439 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 ZNF880Q6PDB4 577 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 Q6ZPA2 131 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 NR2C2APQ86WQ0 139 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 ZNF439Q8NDP4 499 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 OR4K15Q8NH41 348 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 SGMS2Q8NHU3 365 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 CCDC107Q8WV48 283 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 LEAP2Q969E1 77 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 FAM3DQ96BQ1 224 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 NPFFR1Q9GZQ6 430 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 RAB9BQ9NP90 201 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 STEAP1Q9UHE8 339 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 TRAPPC2LQ9UL33 140 aa12.95□□□□□ -0.34
TRIM28-213ENST00000598355 UBE2QL1A1L167 161 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 IFITM5A6NNB3 132 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 FAM90A9PA6NNJ1 464 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 PDCD5O14737 125 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 HBZP02008 142 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 MYL9P24844 172 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 ZNF137PP52743 207 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 OR10A3P58181 314 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 HABP2Q14520 560 aaPredicted RBP12.94□□□□□ -0.34
TRIM28-213ENST00000598355 C22orf42Q6IC83 251 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 CCDC144NLQ6NUI1 221 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 C16orf82Q7Z2V1 217 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 C6orf201Q7Z4U5 140 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 OR51D1Q8NGF3 324 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 OR4C13Q8NGP0 309 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 CFHR4Q92496 578 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 NEDD4LQ96PU5 975 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 URM1Q9BTM9 101 aaKnown RBP12.94□□□□□ -0.34
TRIM28-213ENST00000598355 ZNF702PQ9H963 129 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 TXNL4BQ9NX01 149 aaKnown RBP12.94□□□□□ -0.34
TRIM28-213ENST00000598355 HSF4Q9ULV5 492 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 STUB1Q9UNE7 303 aa12.94□□□□□ -0.34
TRIM28-213ENST00000598355 TRBV6-6A0A0A6YYG2 114 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 SDCBPO00560 298 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-213ENST00000598355 SPINT2O43291 252 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 IGHV3-7P01780 117 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 BLVRBP30043 206 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-213ENST00000598355 GNG10P50151 68 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 ARHGDIBP52566 201 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 CLDN12P56749 244 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 ZNF816Q0VGE8 651 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-213ENST00000598355 MADCAM1Q13477 382 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 HMGN3Q15651 99 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 LTC4SQ16873 150 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 NKAPLQ5M9Q1 402 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 PRR31Q5SQ13 230 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 FAM53AQ6NSI3 398 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-213ENST00000598355 C11orf88Q6PI97 169 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 SLC25A48Q6ZT89 311 aaKnown RBP12.93□□□□□ -0.34
TRIM28-213ENST00000598355 TMEM219Q86XT9 240 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 OR8H3Q8N146 312 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 UBALD1Q8TB05 177 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 TOMM40LQ969M1 308 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 ST6GALNAC6Q969X2 333 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 ZNF696Q9H7X3 374 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 TAF9BQ9HBM6 251 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 TET2Q6N021 2002 aaPredicted RBP12.93□□□□□ -0.34
TRIM28-213ENST00000598355 VWFP04275 2813 aa12.93□□□□□ -0.34
TRIM28-213ENST00000598355 TMEM272A0A1B0GTI8 110 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 SOCS1O15524 211 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 RAB3BP20337 219 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 BRS3P32247 399 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 RAB7AP51149 207 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 TMEM50BP56557 158 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 SRSF4Q08170 494 aaKnown RBP12.92□□□□□ -0.34
TRIM28-213ENST00000598355 DIAPH2-AS1Q14236 149 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 C2orf76Q3KRA6 126 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 LY6G6FQ5SQ64 297 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 HES5Q5TA89 166 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 DTX3Q8N9I9 347 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 OR1L1Q8NH94 360 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 RPEQ96AT9 228 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 OCSTAMPQ9BR26 566 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 FAAP24Q9BTP7 215 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 LIN7BQ9HAP6 207 aa12.92□□□□□ -0.34
TRIM28-213ENST00000598355 IGHV3-43A0A0B4J1X8 118 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 TRIM64CA6NLI5 447 aa12.91□□□□□ -0.34
TRIM28-213ENST00000598355 OR2F2O95006 317 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms