RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 C6orf183Q5T699 404 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 MOB3BQ86TA1 216 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 GAPTQ8N292 157 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 TMEM104Q8NE00 496 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 KLHL30-AS1Q8NEE0 82 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 OR10K1Q8NGX5 313 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 OR8U1Q8NH10 309 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 CYGBQ8WWM9 190 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 RTN4IP1Q8WWV3 396 aaPredicted RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 LEAP2Q969E1 77 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 ORAI1Q96D31 301 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 C8orf4Q9NR00 106 aa10.73□□□□□ -0.69
TRIM28-211ENST00000597968 RCC2Q9P258 522 aaKnown RBP10.73□□□□□ -0.69
TRIM28-211ENST00000597968 TRBV5-5A0A0J9YX44 114 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 WI2-2373I1.2A0A1W2PRP0 233 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 NCBP2LA6PVI3 153 aaKnown RBP10.72□□□□□ -0.69
TRIM28-211ENST00000597968 MCRIP1C9JLW8 97 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 AIPO00170 330 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 CDRT1O95170 752 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 MOSP00540 346 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 LALBAP00709 142 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 MT-ND4P03905 459 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 NHLRC4P0CG21 123 aaPredicted RBP10.72□□□□□ -0.69
TRIM28-211ENST00000597968 GPR12P47775 334 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 TAS2R43P59537 309 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 CD69Q07108 199 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 DIAPH2-AS1Q14236 149 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 HNF4GQ14541 408 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 KIR2DS1Q14954 304 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 LTC4SQ16873 150 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 Q499Y3 187 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 CXorf66Q5JRM2 361 aaPredicted RBP10.72□□□□□ -0.69
TRIM28-211ENST00000597968 SLC25A48Q6ZT89 311 aaKnown RBP10.72□□□□□ -0.69
TRIM28-211ENST00000597968 C8orf86Q6ZUL3 223 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 Q8N9W7 124 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 NOL4LQ96MY1 436 aaPredicted RBP10.72□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF184Q99676 751 aaPredicted RBP10.72□□□□□ -0.69
TRIM28-211ENST00000597968 RASL11BQ9BPW5 248 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 ZNF581Q9P0T4 197 aa10.72□□□□□ -0.69
TRIM28-211ENST00000597968 COL7A1Q02388 2944 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 CCL24O00175 119 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 SC5DO75845 299 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 IGHV3-7P01780 117 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 IGF1P05019 195 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 CD1AP06126 327 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 SERPINA2P20848 420 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 DGCR2P98153 550 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 GPR50Q13585 617 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 ATAD3CQ5T2N8 411 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 TTC23Q5W5X9 447 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 DMKNQ6E0U4 476 aaPredicted RBP10.71□□□□□ -0.69
TRIM28-211ENST00000597968 ZFP41Q8N8Y5 198 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 OR5M8Q8NGP6 311 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 OR13C5Q8NGS8 318 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 NEK7Q8TDX7 302 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 GHSRQ92847 366 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 WWC2-AS2Q96NR7 200 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 S1PR3Q99500 378 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 DCLRE1BQ9H816 532 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 PLSCR3Q9NRY6 295 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 GHRLQ9UBU3 117 aa10.71□□□□□ -0.69
TRIM28-211ENST00000597968 TRAV39A0A0B4J263 110 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 IGHG4P01861 327 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 HOXD3P31249 432 aaPredicted RBP10.7□□□□□ -0.7
TRIM28-211ENST00000597968 SOX6P35712 828 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 SLC22A6Q4U2R8 563 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 LY6G6FQ5SQ64 297 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 C9orf66Q5T8R8 295 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 FAM71E2Q8N5Q1 922 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 NKAIN3Q8N8D7 197 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 ZNF439Q8NDP4 499 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 SETD9Q8NE22 299 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 GGHQ92820 318 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 TMEM80Q96HE8 168 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 TRAPPC2LQ9UL33 140 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 LRRC42Q9Y546 428 aa10.7□□□□□ -0.7
TRIM28-211ENST00000597968 A0A1W2PPE3 182 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 C12orf77C9JDV5 145 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 ANKRD65E5RJM6 399 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 LANCL1O43813 399 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 VDAC1P21796 283 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 INSL3P51460 131 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 ADARB1P78563 741 aaKnown RBP10.69□□□□□ -0.7
TRIM28-211ENST00000597968 CFHR3Q02985 330 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 DOC2BQ14184 412 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 RCN1Q15293 331 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 SYT6Q5T7P8 510 aaPredicted RBP10.69□□□□□ -0.7
TRIM28-211ENST00000597968 UQCC2Q9BRT2 126 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 MBNL3Q9NUK0 354 aaKnown RBP10.69□□□□□ -0.7
TRIM28-211ENST00000597968 ETAA1Q9NY74 926 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 GNG12Q9UBI6 72 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 JPT1Q9UK76 154 aa10.69□□□□□ -0.7
TRIM28-211ENST00000597968 TRBV5-7A0A0A0MS05 114 aa10.68□□□□□ -0.7
TRIM28-211ENST00000597968 A0A1W2PPK0 400 aa10.68□□□□□ -0.7
TRIM28-211ENST00000597968 GNAO1P09471 354 aa10.68□□□□□ -0.7
TRIM28-211ENST00000597968 FUT3P21217 361 aa10.68□□□□□ -0.7
TRIM28-211ENST00000597968 MAPK3P27361 379 aaPredicted RBP10.68□□□□□ -0.7
TRIM28-211ENST00000597968 CAPGP40121 348 aa10.68□□□□□ -0.7
TRIM28-211ENST00000597968 REG1BP48304 166 aa10.68□□□□□ -0.7
TRIM28-211ENST00000597968 RPS11P62280 158 aaKnown RBP eCLIP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms