RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SERPINA2P20848 420 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 VDAC1P21796 283 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 CHATP28329 748 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 SOX6P35712 828 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 ZNF93P35789 620 aaPredicted RBP9.28□□□□□ -0.92
LIG3-209ENST00000586435 SOX2P48431 317 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 GTF2A1P52655 376 aaPredicted RBP9.28□□□□□ -0.92
LIG3-209ENST00000586435 PPP3R1P63098 170 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 DDI2Q5TDH0 399 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 RPL22L1Q6P5R6 122 aaKnown RBP9.28□□□□□ -0.92
LIG3-209ENST00000586435 ZNF497Q6ZNH5 498 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 ZNF439Q8NDP4 499 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 OR52I1Q8NGK6 324 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 PRR25Q96S07 402 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 HSPB9Q9BQS6 159 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 AMBNQ9NP70 447 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 RAB9BQ9NP90 201 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 FAM53CQ9NYF3 392 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 RCC2Q9P258 522 aaKnown RBP9.28□□□□□ -0.92
LIG3-209ENST00000586435 SCOCQ9UIL1 159 aa9.28□□□□□ -0.92
LIG3-209ENST00000586435 RPL36Q9Y3U8 105 aaKnown RBP9.28□□□□□ -0.92
LIG3-209ENST00000586435 H3BNX3 289 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 AIPO00170 330 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 MT-ND4P03905 459 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 BDKRB2P30411 391 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 VHLP40337 213 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 ECI1P42126 302 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 INSL3P51460 131 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 STEAP3Q658P3 488 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 ZFP1Q6P2D0 407 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 GAPTQ8N292 157 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 CBR4Q8N4T8 237 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 S100A13Q99584 98 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 SPACA1Q9HBV2 294 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 ING4Q9UNL4 249 aa9.27□□□□□ -0.93
LIG3-209ENST00000586435 ZNF256Q9Y2P7 627 aaPredicted RBP9.27□□□□□ -0.93
LIG3-209ENST00000586435 IGHV3-43A0A0B4J1X8 118 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 ZNF736B4DX44 427 aaPredicted RBP9.26□□□□□ -0.93
LIG3-209ENST00000586435 SLC31A2O15432 143 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 LANCL1O43813 399 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 IGHV3-43DP0DP04 118 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 GTF2F2P13984 249 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 IGFBP3P17936 291 aaPredicted RBP9.26□□□□□ -0.93
LIG3-209ENST00000586435 F2RL1P55085 397 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 RUNX1Q01196 453 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 RIPK1Q13546 671 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 GPR176Q14439 515 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 ATAD3CQ5T2N8 411 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 C6orf183Q5T699 404 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 XAF1Q6GPH4 301 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 FAM53AQ6NSI3 398 aaPredicted RBP9.26□□□□□ -0.93
LIG3-209ENST00000586435 TRAT1Q6PIZ9 186 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 STX19Q8N4C7 294 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 OR11H1Q8NG94 326 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 UBALD1Q8TB05 177 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 NEK7Q8TDX7 302 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 CCDC107Q8WV48 283 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 APH1BQ8WW43 257 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 SMIM19Q96E16 107 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 MRPS24Q96EL2 167 aaKnown RBP9.26□□□□□ -0.93
LIG3-209ENST00000586435 UBE2E2Q96LR5 201 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 KCTD7Q96MP8 289 aa9.26□□□□□ -0.93
LIG3-209ENST00000586435 FGF20Q9NP95 211 aaPredicted RBP9.26□□□□□ -0.93
LIG3-209ENST00000586435 A0A1W2PP11 408 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 C12orf77C9JDV5 145 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 SPINT2O43291 252 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 CA11O75493 328 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 GPX5O75715 221 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 OR8U8P0C7N1 319 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 FSTP19883 344 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 DCKP27707 260 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 PPIFP30405 207 aaKnown RBP9.25□□□□□ -0.93
LIG3-209ENST00000586435 ZNF134P52741 427 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 LSAMPQ13449 338 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 ZNF260Q3ZCT1 412 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 SLC22A6Q4U2R8 563 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 CT45A1Q5HYN5 189 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 CT45A3Q8NHU0 189 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 ZNF184Q99676 751 aaPredicted RBP9.25□□□□□ -0.93
LIG3-209ENST00000586435 C9orf16Q9BUW7 83 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 CHCHD3Q9NX63 227 aaKnown RBP9.25□□□□□ -0.93
LIG3-209ENST00000586435 GNG12Q9UBI6 72 aa9.25□□□□□ -0.93
LIG3-209ENST00000586435 ZNF107Q9UII5 783 aaPredicted RBP9.25□□□□□ -0.93
LIG3-209ENST00000586435 TRBV5-5A0A0J9YX44 114 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 LOC100130705A0A1B0GUX0 176 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 FAM90A10PA6NDY2 464 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 FAM90A7PA6NKC0 464 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 FAM90A23PA8MXZ1 464 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 MCRIP1C9JLW8 97 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 I3L521 148 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 DYNC1I1O14576 645 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 OGG1O15527 345 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 SC5DO75845 299 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 HLA-DRB1P01911 266 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 HBZP02008 142 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 ZNF616Q08AN1 781 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 KIAA0141Q14154 515 aaPredicted RBP9.24□□□□□ -0.93
LIG3-209ENST00000586435 MMDQ15546 238 aa9.24□□□□□ -0.93
LIG3-209ENST00000586435 SYT6Q5T7P8 510 aaPredicted RBP9.24□□□□□ -0.93
LIG3-209ENST00000586435 ASPHD1Q5U4P2 390 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms