RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 TRAT1Q6PIZ9 186 aa9.91□□□□□ -0.82
SS18-225ENST00000585121 UNQ9370/PRO34162Q6UXP9 181 aa9.91□□□□□ -0.82
SS18-225ENST00000585121 CEACAM19Q7Z692 300 aa9.91□□□□□ -0.82
SS18-225ENST00000585121 OR8H3Q8N146 312 aa9.91□□□□□ -0.82
SS18-225ENST00000585121 PHYHIPQ92561 330 aa9.91□□□□□ -0.82
SS18-225ENST00000585121 RCC2Q9P258 522 aaKnown RBP9.91□□□□□ -0.82
SS18-225ENST00000585121 WIPF1O43516 503 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 GAPDHP04406 335 aaKnown RBP9.9□□□□□ -0.82
SS18-225ENST00000585121 LPLP06858 475 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 HSMCR30P0CW71 290 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 TRAM1Q15629 374 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 TMEM30BQ3MIR4 351 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 C9orf152Q5JTZ5 239 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 SYT6Q5T7P8 510 aaPredicted RBP9.9□□□□□ -0.82
SS18-225ENST00000585121 CENPVQ7Z7K6 275 aaPredicted RBP9.9□□□□□ -0.82
SS18-225ENST00000585121 NDUFA11Q86Y39 141 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 SGCDQ92629 289 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 FCGR1BQ92637 280 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 Q96M66 194 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 NEDD4LQ96PU5 975 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 WNT10AQ9GZT5 417 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 GFOD1Q9NXC2 390 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 KCNIP1Q9NZI2 227 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 LSM2Q9Y333 95 aaKnown RBP9.9□□□□□ -0.82
SS18-225ENST00000585121 NOTCH1P46531 2555 aa9.9□□□□□ -0.82
SS18-225ENST00000585121 TET2Q6N021 2002 aaPredicted RBP9.9□□□□□ -0.83
SS18-225ENST00000585121 C15orf65H3BRN8 121 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 CCRL2O00421 344 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 PDCD6O75340 191 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 MPIG6BO95866 241 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 SNRNP70P08621 437 aaKnown RBP9.89□□□□□ -0.83
SS18-225ENST00000585121 CD28P10747 220 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 SRMP19623 302 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 INSL4Q14641 139 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 IRF3Q14653 427 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 Q3ZCU0 254 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 UTF1Q5T230 341 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 LIPKQ5VXJ0 399 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 Q6ZS46 218 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 GPR141Q7Z602 305 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 LYPD6Q86Y78 171 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 LINC00311Q8N616 119 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 DRAM1Q8N682 238 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 C8orf31Q8N9H6 132 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 TMEM104Q8NE00 496 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 OR56B4Q8NH76 319 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 FAM46BQ96A09 425 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 DGCR14Q96DF8 476 aaKnown RBP9.89□□□□□ -0.83
SS18-225ENST00000585121 OCSTAMPQ9BR26 566 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 ACOT13Q9NPJ3 140 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 GNG12Q9UBI6 72 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 MOB4Q9Y3A3 225 aa9.89□□□□□ -0.83
SS18-225ENST00000585121 A0A1W2PPE3 182 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 UBE2QL1A1L167 161 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 FAM90A9PA6NNJ1 464 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 HSD17B6O14756 317 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OPN1MWP04001 364 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OPN1MW2P0DN77 364 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OPN1MW3P0DN78 364 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 TMEM11P17152 192 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 PSMA1P25786 263 aaKnown RBP9.88□□□□□ -0.83
SS18-225ENST00000585121 RANBP1P43487 201 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 TBCEQ15813 527 aaPredicted RBP9.88□□□□□ -0.83
SS18-225ENST00000585121 NEDD8Q15843 81 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 TMEM95Q3KNT9 176 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 NKAPLQ5M9Q1 402 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 FAM27D1Q5T7N8 215 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 UBE2UQ5VVX9 321 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 MOB3BQ86TA1 216 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 LYG1Q8N1E2 194 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 PRR18Q8N4B5 295 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OR4F17Q8NGA8 305 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OR5AU1Q8NGC0 362 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OR4K15Q8NH41 348 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 KCNG3Q8TAE7 436 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 UBALD1Q8TB05 177 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 OR4F4Q96R69 305 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 ISYNA1Q9NPH2 558 aa9.88□□□□□ -0.83
SS18-225ENST00000585121 IGHV3-43A0A0B4J1X8 118 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 C12orf77C9JDV5 145 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 KCNAB3O43448 404 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 ARL6IP5O75915 188 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 HBZP02008 142 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 UCHL1P09936 223 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 IGHV3-43DP0DP04 118 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 HTR2CP28335 458 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 ZNF816Q0VGE8 651 aaPredicted RBP9.87□□□□□ -0.83
SS18-225ENST00000585121 C1orf100Q5SVJ3 147 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 HIST2H2BDQ6DRA6 164 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 LRRTM1Q86UE6 522 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 OR4X2Q8NGF9 303 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 OR13F1Q8NGS4 319 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 TMEM203Q969S6 136 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 R3HDM4Q96D70 268 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 CITED2Q99967 270 aaPredicted RBP9.87□□□□□ -0.83
SS18-225ENST00000585121 TMEM59Q9BXS4 323 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 A0A1W2PPI3 338 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 ZNF701M0R085 212 aaPredicted RBP9.87□□□□□ -0.83
SS18-225ENST00000585121 SC5DO75845 299 aa9.87□□□□□ -0.83
SS18-225ENST00000585121 IGKV1D-33P01593 117 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms