RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GZMMP51124 257 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ZNF133P52736 654 aaPredicted RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 TCTAP57738 103 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 RAB5BP61020 215 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 RUNX1Q01196 453 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ZNF266Q14584 549 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 CDK10Q15131 360 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 RSU1Q15404 277 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SHHQ15465 462 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SIX1Q15475 284 aaPredicted RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 LRRC36Q1X8D7 754 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 MICAQ29983 383 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 CEACAM16Q2WEN9 425 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SMIM21Q3B7S5 101 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 TCTEX1D4Q5JR98 221 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 KLF17Q5JT82 389 aaPredicted RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 FAM78BQ5VT40 261 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ZNF343Q6P1L6 599 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 CNIH2Q6PI25 160 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SMARCD3Q6STE5 483 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 TMEM205Q6UW68 189 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 GRINAQ7Z429 371 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 MRPL55Q7Z7F7 128 aaKnown RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 CDC20BQ86Y33 519 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 UBALD2Q8IYN6 164 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 CADM2Q8N3J6 435 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 NUP37Q8NFH4 326 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 OR13C6PQ8NH95 151 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 PPTC7Q8NI37 304 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 AGAP11Q8TF27 550 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 RXFP2Q8WXD0 754 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SRSF12Q8WXF0 261 aaKnown RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 TMEM230Q96A57 120 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 EXOSC8Q96B26 276 aaKnown RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 TAMM41Q96BW9 452 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ZNF486Q96H40 463 aaPredicted RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 FAM19A4Q96LR4 140 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 MCEEQ96PE7 176 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 C12orf57Q99622 126 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 FAAP24Q9BTP7 215 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 KIFC1Q9BW19 673 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 CDC42EP4Q9H3Q1 356 aaKnown RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 RPF2Q9H7B2 306 aaKnown RBP2.6□□□□□ -1.99
NUP88-209ENST00000574855 TAS2R5Q9NYW4 299 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 CALYQ9NYX4 217 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 IDI2-AS1Q9NZ38 188 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 DOK5Q9P104 306 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SPRR3Q9UBC9 169 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ANGPT4Q9Y264 503 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 TP53TG5Q9Y2B4 290 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 SIPA1L1O43166 1804 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ATAD5Q96QE3 1844 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ADAMTS9Q9P2N4 1935 aa2.6□□□□□ -1.99
NUP88-209ENST00000574855 ARFGEF1Q9Y6D6 1849 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 KMT2EQ8IZD2 1858 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 hCG_1818297A0A087WSY0 165 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 IGLV1-36A0A0B4J1U3 117 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 TRAV8-4A0A0B4J246 113 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 A0A0G2JRQ6 117 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 TRABD2BA6NFA1 517 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 MPTX1A8MV57 137 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 J3QT63 122 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 K7ENP7 123 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 K7EP13 123 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 APOC4-APOC2K7ER74 178 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 M0QYV0 167 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 PDE6DO43924 150 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 GALR3O60755 368 aaPredicted RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 NPIPB7O75200 414 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SRSF10O75494 262 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 STK16O75716 305 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 OR2J2O76002 312 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SEMA4FO95754 770 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 P01737 135 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 APOC2P02655 101 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SHBGP04278 402 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 EIF4EP06730 217 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 IL3P08700 152 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SLC35G6P0C7Q6 338 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 HSD17B1P14061 328 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 GABRA1P14867 456 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 ZNF708P17019 499 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 RCC1P18754 421 aaPredicted RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 OGNP20774 298 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 KDELR1P24390 212 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 S100PP25815 95 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 PAX6P26367 422 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 ERP29P30040 261 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 SDC4P31431 198 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SERPINB5P36952 375 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 CTRLP40313 264 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 CDKN2BP42772 138 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 RPL29P47914 159 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 MARCKSL1P49006 195 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 MEOX2P50222 304 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 SLC18A1P54219 525 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 HIST1H3AP68431 136 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 H3F3AP84243 136 aa2.59□□□□□ -1.99
NUP88-209ENST00000574855 PRDX1Q06830 199 aaKnown RBP2.59□□□□□ -1.99
NUP88-209ENST00000574855 SLC10A7Q0GE19 358 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms