RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CEACAM1P13688 526 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 RHEBQ15382 184 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.34■□□□□ 0.69
VPS53-211ENST00000571805 MED12LQ86YW9 2145 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 OR51H1Q8NH63 302 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 CD300LFQ8TDQ1 290 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 WDYHV1Q96HA8 205 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 DEFB127Q9H1M4 99 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 NPIPB11E5RHQ5 1161 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 IFNA4P05014 189 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 SLC25A6P12236 298 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 S100GP29377 79 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 RUNX1Q01196 453 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 TGIF1Q15583 401 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 WDR86Q86TI4 376 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 OR1J1Q8NGS3 322 aa19.34■□□□□ 0.69
VPS53-211ENST00000571805 KNTC1P50748 2209 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 A0A1B0GU03 582 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 A0A1W2PPH5 198 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 C1orf196B1AJZ1 125 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP19.33■□□□□ 0.69
VPS53-211ENST00000571805 WRBO00258 174 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 OR10V1Q8NGI7 309 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 C12orf57Q99622 126 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 R4GN57 208 aa19.33■□□□□ 0.69
VPS53-211ENST00000571805 BTBD17A6NE02 478 aa19.33■□□□□ 0.68
VPS53-211ENST00000571805 A6NLC8 198 aa19.33■□□□□ 0.68
VPS53-211ENST00000571805 AGAP20933 346 aa19.33■□□□□ 0.68
VPS53-211ENST00000571805 SULT1A1P50225 295 aa19.33■□□□□ 0.68
VPS53-211ENST00000571805 IL1F10Q8WWZ1 152 aa19.33■□□□□ 0.68
VPS53-211ENST00000571805 ATP5SQ99766 215 aa19.33■□□□□ 0.68
VPS53-211ENST00000571805 FRYQ5TBA9 3013 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 TRAV39A0A0B4J263 110 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 CDX4O14627 284 aaPredicted RBP19.32■□□□□ 0.68
VPS53-211ENST00000571805 IGKV1-39P01597 117 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 IGKV1D-39P04432 117 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 SERPINE2P07093 398 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 TESK1Q15569 626 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 OR8G1Q15617 311 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 SOHLH1Q5JUK2 328 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 Q6ZRM9 215 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 MYPOPQ86VE0 399 aaPredicted RBP19.32■□□□□ 0.68
VPS53-211ENST00000571805 NANOS1Q8WY41 292 aaKnown RBP19.32■□□□□ 0.68
VPS53-211ENST00000571805 SP9P0CG40 484 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 SNRPEP62304 92 aaKnown RBP19.32■□□□□ 0.68
VPS53-211ENST00000571805 RNFT1Q5M7Z0 435 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 VASH2Q86V25 355 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 TREM2Q9NZC2 230 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 KIAA1456Q9P272 454 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 SPRR3Q9UBC9 169 aa19.32■□□□□ 0.68
VPS53-211ENST00000571805 A0A1W2PR80 420 aa19.31■□□□□ 0.68
VPS53-211ENST00000571805 TXNL1O43396 289 aa19.31■□□□□ 0.68
VPS53-211ENST00000571805 ERVK11-1P61568 191 aa19.31■□□□□ 0.68
VPS53-211ENST00000571805 IZUMO4Q1ZYL8 232 aa19.31■□□□□ 0.68
VPS53-211ENST00000571805 ZNF497Q6ZNH5 498 aa19.31■□□□□ 0.68
VPS53-211ENST00000571805 HIPK2Q9H2X6 1198 aa19.31■□□□□ 0.68
VPS53-211ENST00000571805 ARG1P05089 322 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 MDH2P40926 338 aaKnown RBP19.3■□□□□ 0.68
VPS53-211ENST00000571805 KRBOX4Q5JUW0 171 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 ZNF561Q8N587 486 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 FER1L6-AS2Q96M78 137 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 RTL8AQ9BWD3 113 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 ZNF14P17017 642 aaPredicted RBP19.3■□□□□ 0.68
VPS53-211ENST00000571805 TAS2R30P59541 319 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 PLA2G2CQ5R387 149 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 SCCPDHQ8NBX0 429 aa19.3■□□□□ 0.68
VPS53-211ENST00000571805 PIGBOS1A0A0B4J2F0 54 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 A0A1W2PPE2 198 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 C5orf52A6NGY3 159 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 OR2H2O95918 312 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 CELA3BP08861 270 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 CD46P15529 392 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 RAB5AP20339 215 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 TBC1D28Q2M2D7 210 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 RAB40CQ96S21 281 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 LRP5LA4QPB2 252 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 SIRPB1O00241 398 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 TNFSF15O95150 251 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 MOB1BQ7L9L4 216 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 FAM24BQ8N5W8 94 aa19.29■□□□□ 0.68
VPS53-211ENST00000571805 LSM10Q969L4 123 aaKnown RBP19.29■□□□□ 0.68
VPS53-211ENST00000571805 PUS1Q9Y606 427 aaKnown RBP eCLIP19.29■□□□□ 0.68
VPS53-211ENST00000571805 NCOR1O75376 2440 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 TRGV5A0A0B4J1U4 118 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 H3BP45 60 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 SRP19P09132 144 aaKnown RBP19.28■□□□□ 0.68
VPS53-211ENST00000571805 MEOX2P50222 304 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 RPL23AP62750 156 aaKnown RBP19.28■□□□□ 0.68
VPS53-211ENST00000571805 DHRS13Q6UX07 377 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 STX12Q86Y82 276 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 J3QW42 95 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 SMPD2O60906 423 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 EIF3GO75821 320 aaKnown RBP eCLIP19.28■□□□□ 0.68
VPS53-211ENST00000571805 DFFBO76075 338 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 HAGHQ16775 308 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 AKR1C8PQ5T2L2 129 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 ATP1A1-AS1Q5TC04 95 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 OR2J1Q9GZK6 312 aa19.28■□□□□ 0.68
VPS53-211ENST00000571805 hCG_1809904A0A1W2PP81 198 aa19.27■□□□□ 0.68
VPS53-211ENST00000571805 A0A1W2PR64 198 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms