RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	ZNF554	Q86TJ5	538 aa		11.78	□□□□□ -0.52
CLN3-222	ENST00000566083	ZNF695	Q8IW36	515 aa		11.78	□□□□□ -0.52
CLN3-222	ENST00000566083	EAF1	Q96JC9	268 aa	Predicted RBP	11.78	□□□□□ -0.52
CLN3-222	ENST00000566083	ABCG5	Q9H222	651 aa		11.78	□□□□□ -0.52
CLN3-222	ENST00000566083	RCC2	Q9P258	522 aa	Known RBP	11.78	□□□□□ -0.52
CLN3-222	ENST00000566083	TRAV39	A0A0B4J263	110 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	EFCAB10	A6NFE3	127 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	MOS	P00540	346 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	MAPK3	P27361	379 aa	Predicted RBP	11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	ZNF137P	P52743	207 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	DEFB121	Q5J5C9	76 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	JAGN1	Q8N5M9	183 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	NKAIN3	Q8N8D7	197 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	CCDC107	Q8WV48	283 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	CYGB	Q8WWM9	190 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	NOL4L	Q96MY1	436 aa	Predicted RBP	11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	RASL11B	Q9BPW5	248 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	CHCHD6	Q9BRQ6	235 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	ETAA1	Q9NY74	926 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	GNG12	Q9UBI6	72 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	GHRL	Q9UBU3	117 aa		11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	MRPS28	Q9Y2Q9	187 aa	Known RBP	11.77	□□□□□ -0.52
CLN3-222	ENST00000566083	SIRT4	Q9Y6E7	314 aa	Predicted RBP	11.77	□□□□□ -0.52
CLN3-222	ENST00000566083		A0A1W2PPE3	182 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083		K7EIL1	84 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	CD1A	P06126	327 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	VAX1	Q5SQQ9	334 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	SYT6	Q5T7P8	510 aa	Predicted RBP	11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	AWAT2	Q6E213	333 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	GLIPR1L1	Q6UWM5	242 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	SLC25A48	Q6ZT89	311 aa	Known RBP	11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	DHRSX	Q8N5I4	330 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083		Q8N6K4	173 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	KLHL30-AS1	Q8NEE0	82 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	ST6GALNAC6	Q969X2	333 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	KCNIP1	Q9NZI2	227 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	CNOT2	Q9NZN8	540 aa	Known RBP	11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	LRRC42	Q9Y546	428 aa		11.77	□□□□□ -0.53
CLN3-222	ENST00000566083	ELANE	P08246	267 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	OR5H8	P0DN80	308 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	FUT3	P21217	361 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	CAPG	P40121	348 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	GPR12	P47775	334 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	REG1B	P48304	166 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	RPS11	P62280	158 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	ST3GAL4	Q11206	333 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	FOXE3	Q13461	319 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	DOC2B	Q14184	412 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	RAB12	Q6IQ22	244 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	C8orf86	Q6ZUL3	223 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	GAPT	Q8N292	157 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	TMEM104	Q8NE00	496 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	PGLYRP3	Q96LB9	341 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	P2RX4	Q99571	388 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	UQCC2	Q9BRT2	126 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	CLEC2D	Q9UHP7	191 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	ZNF580	Q9UK33	172 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	PEX16	Q9Y5Y5	336 aa		11.76	□□□□□ -0.53
CLN3-222	ENST00000566083	TRBV5-7	A0A0A0MS05	114 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	C12orf77	C9JDV5	145 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	RAMP3	O60896	148 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	LALBA	P00709	142 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	SOX6	P35712	828 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	GPR50	Q13585	617 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	ETV3L	Q6ZN32	361 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083		Q8N9W7	124 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	ZNF485	Q8NCK3	441 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	OR13C5	Q8NGS8	318 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	OR8U1	Q8NH10	309 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	MUL1	Q969V5	352 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	OR14A2	Q96R54	314 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	S1PR3	Q99500	378 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	CST11	Q9H112	138 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	ZNF581	Q9P0T4	197 aa		11.75	□□□□□ -0.53
CLN3-222	ENST00000566083	TRAV8-7	A0A075B6U6	113 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	IGHV3-72	A0A0B4J1Y9	119 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083		A0A1W2PP11	408 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083		H0YHG0	523 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	MYL12B	O14950	172 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	SC5D	O75845	299 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	RGS11	O94810	467 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	HBZ	P02008	142 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	MGMT	P16455	207 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	VDAC1	P21796	283 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	CDX1	P47902	265 aa	Predicted RBP	11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	KRTAP10-11	P60412	298 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	C8orf59	Q8N0T1	100 aa	Predicted RBP	11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	RNF152	Q8N8N0	203 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	GGH	Q92820	318 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	ORAI1	Q96D31	301 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	SELENOI	Q9C0D9	397 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	LINC00527	Q9UJ94	153 aa		11.74	□□□□□ -0.53
CLN3-222	ENST00000566083	IGHV3-43	A0A0B4J1X8	118 aa		11.73	□□□□□ -0.53
CLN3-222	ENST00000566083	CCL24	O00175	119 aa		11.73	□□□□□ -0.53
CLN3-222	ENST00000566083	LANCL1	O43813	399 aa		11.73	□□□□□ -0.53
CLN3-222	ENST00000566083	CRTAP	O75718	401 aa	Predicted RBP	11.73	□□□□□ -0.53
CLN3-222	ENST00000566083	MAS1	P04201	325 aa		11.73	□□□□□ -0.53
CLN3-222	ENST00000566083	UBB	P0CG47	229 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms