RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 DGCR2P98153 550 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 C11orf42Q8N5U0 333 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 GVQW1Q8N7I0 195 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 BEST4Q8NFU0 473 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 OR4A4PQ8NGN8 299 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 MAFIPQ8WZ33 124 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 WDR12Q9GZL7 423 aaKnown RBP16.94■□□□□ 0.3
CLN3-212ENST00000564574 SIRPDQ9H106 197 aa16.94■□□□□ 0.3
CLN3-212ENST00000564574 METTL8Q9H825 291 aaKnown RBP16.94■□□□□ 0.3
CLN3-212ENST00000564574 UNKLQ9H9P5 680 aaKnown RBP16.94■□□□□ 0.3
CLN3-212ENST00000564574 MEIS3P1A6NDR6 274 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 F2RL2O00254 374 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 FABP7O15540 132 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 IGHV1-8P0DP01 117 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 FPR2P25090 351 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 HTD2P86397 168 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 LSAMPQ13449 338 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 OR52W1Q6IF63 320 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 Q8N402 240 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 Q8N7P7 452 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 OR52M1Q8NGK5 317 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 GALMQ96C23 342 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 ZNF107Q9UII5 783 aaPredicted RBP16.93■□□□□ 0.3
CLN3-212ENST00000564574 ANXA10Q9UJ72 324 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 ABCA1O95477 2261 aa16.93■□□□□ 0.3
CLN3-212ENST00000564574 TOX4O94842 621 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 CTXN2P0C2S0 81 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 MMP9P14780 707 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 PRTN3P24158 256 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 KRTAP1-1Q07627 177 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 ZNF846Q147U1 533 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 RNASE12Q5GAN4 147 aaKnown RBP16.92■□□□□ 0.3
CLN3-212ENST00000564574 STEAP3Q658P3 488 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 PRR18Q8N4B5 295 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 OR1L1Q8NH94 360 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 RFESDQ8TAC1 157 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 KIRREL1Q96J84 757 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 CABLES2Q9BTV7 478 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 TAS2R8Q9NYW2 309 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 KLK11Q9UBX7 282 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 KCNS2Q9ULS6 477 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 RBMX2Q9Y388 322 aaKnown RBP16.92■□□□□ 0.3
CLN3-212ENST00000564574 AUP1Q9Y679 476 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 SESN1Q9Y6P5 492 aa16.92■□□□□ 0.3
CLN3-212ENST00000564574 FLNAP21333 2647 aaKnown RBP16.92■□□□□ 0.3
CLN3-212ENST00000564574 IGKV1D-8A0A087WSZ0 117 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 SCTP09683 121 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 GSTT2P0CG29 244 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 GSTT2BP0CG30 244 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 CD40LGP29965 261 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 ARPC4P59998 168 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 PRAMEF5Q5TYX0 476 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 FAHD2BQ6P2I3 314 aaPredicted RBP16.91■□□□□ 0.3
CLN3-212ENST00000564574 SNAPC3Q92966 411 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 FAHD2AQ96GK7 314 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 THAP7Q9BT49 309 aaPredicted RBP16.91■□□□□ 0.3
CLN3-212ENST00000564574 TMPRSS13Q9BYE2 586 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 C7orf69Q9H7B7 122 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 JPT1Q9UK76 154 aa16.91■□□□□ 0.3
CLN3-212ENST00000564574 SDCBPO00560 298 aaPredicted RBP16.9■□□□□ 0.3
CLN3-212ENST00000564574 CSF1P09603 554 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 OMGP23515 440 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 PPP5CP53041 499 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 TAS2R46P59540 309 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 Q3ZCU0 254 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 CHRFAM7AQ494W8 412 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 ACTBL2Q562R1 376 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 NCR3LG1Q68D85 454 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 VMO1Q7Z5L0 202 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 OR5AP2Q8NGF4 316 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 TBX15Q96SF7 602 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 HEXA-AS1Q9H8Q6 139 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 GFOD1Q9NXC2 390 aa16.9■□□□□ 0.3
CLN3-212ENST00000564574 A0A087X0M5 115 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 A0A1B0GX30 115 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 MMP23AO75900 390 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 TBPP20226 339 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 GDNFP39905 211 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 TAS2R19P59542 299 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 TEX29Q8N6K0 151 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 TMEM229BQ8NBD8 167 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 OR13D1Q8NGV5 346 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 UBALD1Q8TB05 177 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 IL1F10Q8WWZ1 152 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 UPRTQ96BW1 309 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 PCGF1Q9BSM1 259 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 CCDC32Q9BV29 185 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 TMEM133Q9H2Q1 129 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 OR2S2Q9NQN1 319 aa16.89■□□□□ 0.29
CLN3-212ENST00000564574 CELSR1Q9NYQ6 3014 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 TRBV6-7A0A0A0MS04 114 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 RGS11O94810 467 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 ZBTB25P24278 435 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 CD34P28906 385 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 RIPPLY3P57055 190 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 LOXL3P58215 753 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 HERPUD1Q15011 391 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 CDK10Q15131 360 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 LTC4SQ16873 150 aa16.88■□□□□ 0.29
CLN3-212ENST00000564574 LY6G6FQ5SQ64 297 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms