RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 RS1O15537 224 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 PHF1O43189 567 aaPredicted RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 TRAF3IP2O43734 574 aaPredicted RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 SLC16A7O60669 478 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DIRAS1O95057 198 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 S1PR2O95136 353 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 CDRT1O95170 752 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 GJB5O95377 273 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SIX6O95475 246 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TXNDC12O95881 172 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 NRASP01111 189 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SERPINA7P05543 415 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 IL3P08700 152 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SNRPCP09234 159 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR5G3P0C626 314 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SFTA3P0C7M3 94 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RD3LP0DJH9 198 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ERGP11308 486 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ADCYAP1P18509 176 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 FUT3P21217 361 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RPS4Y1P22090 263 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 GPX3P22352 226 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 MIPP30301 263 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ELK3P41970 407 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RPL29P47914 159 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 SULT1A2P50226 295 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 LHX2P50458 406 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 GPM6AP51674 278 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RND2P52198 227 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TCL1AP56279 114 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TAS2R31P59538 309 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TAS2R30P59541 319 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RPS25P62851 125 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 RPL32P62910 135 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 CRADDP78560 199 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 IL10RBQ08334 325 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ZNF763Q0D2J5 394 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ST3GAL3Q11203 375 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ST3GAL4Q11206 333 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ZNF74Q16587 644 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 LPAL2Q16609 132 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 HIST3H3Q16695 136 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 LTC4SQ16873 150 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TRMT12Q53H54 448 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 LDLRAD2Q5SZI1 272 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OLFML2AQ68BL7 652 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR2T5Q6IEZ7 315 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DHRS11Q6UWP2 260 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 C12orf54Q6X4T0 127 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TEX43Q6ZNM6 134 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 Q7L0L9 218 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 LRRTM1Q86UE6 522 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 GTSCR1Q86UQ5 136 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 PPP1R27Q86WC6 154 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 MEX3DQ86XN8 651 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 FAM24BQ8N5W8 94 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 CLDN19Q8N6F1 224 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 C8orf31Q8N9H6 132 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RNF149Q8NC42 400 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR51S1Q8NGJ8 323 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR5D16Q8NGK9 328 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR1L6Q8NGR2 347 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR2T29Q8NH02 315 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR1P1Q8NH06 330 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR8S1Q8NH09 359 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 OR4A16Q8NH70 328 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ZNF519Q8TB69 540 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 NRGNQ92686 78 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RAB8BQ92930 207 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 LHX4Q969G2 390 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ST6GALNAC6Q969X2 333 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 GALMQ96C23 342 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 PPCDCQ96CD2 204 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DDIT4LQ96D03 193 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 MUCL1Q96DR8 90 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ZMYND19Q96E35 227 aaPredicted RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 HSPB9Q9BQS6 159 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 LRRC61Q9BV99 259 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 C1QTNF6Q9BXI9 259 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SLC17A9Q9BYT1 436 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SLC35B3Q9H1N7 401 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 FAM124BQ9H5Z6 455 aaPredicted RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 ELL3Q9HB65 397 aaPredicted RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 KCNJ16Q9NPI9 418 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DCAF13Q9NV06 445 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 AIG1Q9NVV5 245 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TXNL4BQ9NX01 149 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 FAM206AQ9NX38 181 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 ZNF586Q9NXT0 402 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 FKBP11Q9NYL4 201 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 RABAC1Q9UI14 185 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 TNFSF18Q9UNG2 199 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SIGLEC9Q9Y336 463 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 MEGF6O75095 1541 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 CICQ96RK0 1608 aaPredicted RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 C4AP0C0L4 1744 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 C4BP0C0L5 1744 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 DDX60Q8IY21 1712 aaKnown RBP2.81□□□□□ -1.96
VPS35-203ENST00000562420 ABCA3Q99758 1704 aa2.81□□□□□ -1.96
VPS35-203ENST00000562420 SHANK3Q9BYB0 1731 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms