RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CD34P28906 385 aa17.72■□□□□ 0.43
CLN3-209ENST00000561689 SUPT4H1P63272 117 aaKnown RBP17.72■□□□□ 0.43
CLN3-209ENST00000561689 DHODHQ02127 395 aa17.72■□□□□ 0.43
CLN3-209ENST00000561689 PAX5Q02548 391 aa17.72■□□□□ 0.43
CLN3-209ENST00000561689 SLC9A3R2Q15599 337 aa17.72■□□□□ 0.43
CLN3-209ENST00000561689 CHIAQ9BZP6 476 aa17.72■□□□□ 0.43
CLN3-209ENST00000561689 IGKV1D-13A0A0B4J2D9 117 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 ODAMA1E959 279 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 TMPRSS2O15393 492 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 SIX6O95475 246 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 DANCRP0C864 163 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 IGKV1-13P0DP09 117 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 ANXA3P12429 323 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 PHLDA2Q53GA4 152 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 CLEC18BQ6UXF7 455 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 SPICQ8N5J4 248 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 ZNF436Q9C0F3 470 aaPredicted RBP17.71■□□□□ 0.43
CLN3-209ENST00000561689 PRR13Q9NZ81 148 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 LAMP3Q9UQV4 416 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 DOPEY1Q5JWR5 2465 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 GOSR2O14653 212 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 HSPA12AO43301 675 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 COL8A2P25067 703 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 SSTR5P35346 364 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 PIGPP57054 158 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 HFEQ30201 348 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 ABCA11PQ4W5N1 156 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 C11orf71Q6IPW1 123 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 H1FOOQ8IZA3 346 aaPredicted RBP17.71■□□□□ 0.43
CLN3-209ENST00000561689 SLC38A6Q8IZM9 456 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 MITD1Q8WV92 249 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 SECTM1Q8WVN6 248 aa17.71■□□□□ 0.43
CLN3-209ENST00000561689 A6NNC1 897 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 HBZP02008 142 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 RPS2P15880 293 aaKnown RBP17.7■□□□□ 0.42
CLN3-209ENST00000561689 UCP3P55916 312 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 P2RX3P56373 397 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 FGFRL1Q8N441 504 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 OR5D13Q8NGL4 314 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 GALMQ96C23 342 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 CLEC4MQ9H2X3 399 aaPredicted RBP17.7■□□□□ 0.42
CLN3-209ENST00000561689 UBTD1Q9HAC8 227 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 DCHS2Q6V1P9 2916 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 SIGLEC5O15389 551 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 SLC22A5O76082 557 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 SFT2D2O95562 160 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 DUS4LO95620 317 aaKnown RBP17.7■□□□□ 0.42
CLN3-209ENST00000561689 GNRHRP30968 328 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 IL2RGP31785 369 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 C6orf183Q5T699 404 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 FAM53AQ6NSI3 398 aaPredicted RBP17.7■□□□□ 0.42
CLN3-209ENST00000561689 C11orf88Q6PI97 169 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 KCTD9Q7L273 389 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 NLRC3Q7RTR2 1065 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 RFESDQ8TAC1 157 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 PHB2Q99623 299 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 RSRP1Q9BUV0 290 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 TRAF4Q9BUZ4 470 aaPredicted RBP17.7■□□□□ 0.42
CLN3-209ENST00000561689 DNTTIP1Q9H147 329 aa17.7■□□□□ 0.42
CLN3-209ENST00000561689 DSCAMO60469 2012 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 TEX13DA0A0J9YY54 714 aaPredicted RBP17.69■□□□□ 0.42
CLN3-209ENST00000561689 NKX6-3A6NJ46 265 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 NPIPB11E5RHQ5 1161 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 LY6HO94772 140 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 CEACAM6P40199 344 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 LDLRAD3Q86YD5 345 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 ARL11Q969Q4 196 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 WDR89Q96FK6 387 aaPredicted RBP17.69■□□□□ 0.42
CLN3-209ENST00000561689 LURAP1Q96LR2 239 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 SLC5A7Q9GZV3 580 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 PARP12Q9H0J9 701 aaKnown RBP17.69■□□□□ 0.42
CLN3-209ENST00000561689 RAB1BQ9H0U4 201 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 SLC2A9Q9NRM0 540 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 RDH8Q9NYR8 311 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 OR2W1Q9Y3N9 320 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 KIAA2026Q5HYC2 2103 aa17.69■□□□□ 0.42
CLN3-209ENST00000561689 HEXAP06865 529 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 H2BFSP57053 126 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 DCAF12L2Q5VW00 463 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 DTX2Q86UW9 622 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 ZNF565Q8N9K5 539 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 OR52L2PQ8NGH6 319 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 RTN4IP1Q8WWV3 396 aaPredicted RBP17.68■□□□□ 0.42
CLN3-209ENST00000561689 CRYM-AS1A6NIL9 109 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 SGPP2Q8IWX5 399 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 OR11H4Q8NGC9 324 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 FAM234AQ9H0X4 552 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 DLL4Q9NR61 685 aa17.68■□□□□ 0.42
CLN3-209ENST00000561689 C15orf65H3BRN8 121 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 HSD17B6O14756 317 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 ANKRD55Q3KP44 614 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 LYPD2Q6UXB3 125 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 ZNF818PQ6ZRF7 136 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 C9orf62Q8N4C0 152 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 SLA2Q9H6Q3 261 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 CCL28Q9NRJ3 127 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 PIPOXQ9P0Z9 390 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 HSPB11Q9Y547 144 aa17.67■□□□□ 0.42
CLN3-209ENST00000561689 CCSO14618 274 aa17.66■□□□□ 0.42
CLN3-209ENST00000561689 GZMHP20718 246 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms