RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 GNG12Q9UBI6 72 aa7.18□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF580Q9UK33 172 aa7.18□□□□□ -1.26
HDDC3-204ENST00000559834 RPL36Q9Y3U8 105 aaKnown RBP7.18□□□□□ -1.26
HDDC3-204ENST00000559834 GMPPBQ9Y5P6 360 aa7.18□□□□□ -1.26
HDDC3-204ENST00000559834 SMAD5-AS1Q9Y6J3 95 aa7.18□□□□□ -1.26
HDDC3-204ENST00000559834 MCRIP1C9JLW8 97 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 E9PI62 339 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 AIPO00170 330 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 GEMIN2O14893 280 aaKnown RBP7.17□□□□□ -1.26
HDDC3-204ENST00000559834 LY86O95711 162 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 MT-ND4P03905 459 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 GTF2F2P13984 249 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 PSMB8P28062 276 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 BDKRB2P30411 391 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 ALDH3A2P51648 485 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 CCDC58Q4VC31 144 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 NKAPLQ5M9Q1 402 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 FAM27D1Q5T7N8 215 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 RPL22L1Q6P5R6 122 aaKnown RBP7.17□□□□□ -1.26
HDDC3-204ENST00000559834 SLC25A48Q6ZT89 311 aaKnown RBP7.17□□□□□ -1.26
HDDC3-204ENST00000559834 TMEM104Q8NE00 496 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 OR51A2Q8NGJ7 313 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 OR1N2Q8NGR9 330 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 UBE2E2Q96LR5 201 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 KCTD7Q96MP8 289 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 TAS2R4Q9NYW5 299 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF107Q9UII5 783 aaPredicted RBP7.17□□□□□ -1.26
HDDC3-204ENST00000559834 TRAPPC2LQ9UL33 140 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 VSIG4Q9Y279 399 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 ERGIC3Q9Y282 383 aa7.17□□□□□ -1.26
HDDC3-204ENST00000559834 IGHV3-43A0A0B4J1X8 118 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 EI24O14681 340 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 IGHV3-43DP0DP04 118 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 GABRB1P18505 474 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 SERPINA2P20848 420 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF137PP52743 207 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 F2RL1P55085 397 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 CFHR3Q02985 330 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF616Q08AN1 781 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 FHL3Q13643 280 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 C6orf183Q5T699 404 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 SYT6Q5T7P8 510 aaPredicted RBP7.16□□□□□ -1.26
HDDC3-204ENST00000559834 DDI2Q5TDH0 399 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 TRAT1Q6PIZ9 186 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 TMPRSS11AQ6ZMR5 421 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF497Q6ZNH5 498 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF429Q86V71 674 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 FAM71E2Q8N5Q1 922 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 RHOXF1Q8NHV9 184 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 MUC7Q8TAX7 377 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 TMEM106AQ96A25 262 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 MRPS24Q96EL2 167 aaKnown RBP7.16□□□□□ -1.26
HDDC3-204ENST00000559834 HSPB9Q9BQS6 159 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 AMBNQ9NP70 447 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 MRPS18AQ9NVS2 196 aaKnown RBP7.16□□□□□ -1.26
HDDC3-204ENST00000559834 AASSQ9UDR5 926 aa7.16□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF736B4DX44 427 aaPredicted RBP7.15□□□□□ -1.26
HDDC3-204ENST00000559834 LANCL1O43813 399 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 CA11O75493 328 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 GTF2A1P52655 376 aaPredicted RBP7.15□□□□□ -1.26
HDDC3-204ENST00000559834 RUNX1Q01196 453 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 RIPK1Q13546 671 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 MMDQ15546 238 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 SLC22A6Q4U2R8 563 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 CT45A1Q5HYN5 189 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 CBR4Q8N4T8 237 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF491Q8N8L2 437 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 OR52I1Q8NGK6 324 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 CT45A3Q8NHU0 189 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 UBALD1Q8TB05 177 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 PYDC1Q8WXC3 89 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF251Q9BRH9 671 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 GHITMQ9H3K2 345 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 ETAA1Q9NY74 926 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 KCNIP1Q9NZI2 227 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 ZNF581Q9P0T4 197 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 CKLFQ9UBR5 152 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 TENM3Q9P273 2699 aa7.15□□□□□ -1.26
HDDC3-204ENST00000559834 SORL1Q92673 2214 aa7.15□□□□□ -1.27
HDDC3-204ENST00000559834 C12orf77C9JDV5 145 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 I3L521 148 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 SLC31A2O15432 143 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 HBZP02008 142 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 GLAP06280 429 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 SLC2A2P11168 524 aaPredicted RBP7.14□□□□□ -1.27
HDDC3-204ENST00000559834 DCKP27707 260 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 PPIFP30405 207 aaKnown RBP7.14□□□□□ -1.27
HDDC3-204ENST00000559834 VHLP40337 213 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 RAB9AP51151 201 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 ZNF134P52741 427 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 LSAMPQ13449 338 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 CASC10Q5T4H9 136 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 LIN54Q6MZP7 749 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 ZFP1Q6P2D0 407 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 PRR18Q8N4B5 295 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 ZNF439Q8NDP4 499 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 OR10V1Q8NGI7 309 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 OR4K15Q8NH41 348 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 MYOZ3Q8TDC0 251 aa7.14□□□□□ -1.27
HDDC3-204ENST00000559834 RGP1Q92546 391 aaPredicted RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms