RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FGF16O43320 207 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 MT-CO3P00414 261 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 HEXAP06865 529 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 CELA3BP08861 270 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 VDAC1P21796 283 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 CCL1P22362 96 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 SPEM2Q0P670 501 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 KCNMB1Q16558 191 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF528Q3MIS6 628 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF561Q8N587 486 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 RTL8AQ9BWD3 113 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 OR2D2Q9H210 308 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 PROK2Q9HC23 129 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 POMT1Q9Y6A1 747 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 H3BQ15 152 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 OPN1MWP04001 364 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 IFNA4P05014 189 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 OPN1MW2P0DN77 364 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 OPN1MW3P0DN78 364 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 ARR3P36575 388 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 MST1LQ2TV78 715 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 PRAMEF6Q5VXH4 476 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 GGNQ86UU5 652 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 TMEM222Q9H0R3 208 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 FOXD3Q9UJU5 478 aaPredicted RBP10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 STRAPQ9Y3F4 350 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 YKT6O15498 198 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 RAB5AP20339 215 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 G6PCP35575 357 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 SNCAP37840 140 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 TMEM211Q6ICI0 200 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 HIST1H2BAQ96A08 127 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 HSF4Q9ULV5 492 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 LRRC3CA6NJW4 275 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 WNT9BO14905 357 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 MT-ND4LP03901 98 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 RPS2P15880 293 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 HBG1P69891 147 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 HBG2P69892 147 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 DLK1P80370 383 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 TRA2AQ13595 282 aaKnown RBP eCLIP10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 HMGN3Q15651 99 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 HES3Q5TGS1 186 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF880Q6PDB4 577 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 LYPD6Q86Y78 171 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 UBAC2Q8NBM4 344 aa10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 USB1Q9BQ65 265 aaKnown RBP10.41□□□□□ -0.74
CCDC88C-211ENST00000556726 CRYGSP22914 178 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 SOX8P57073 446 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 C9orf152Q5JTZ5 239 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 OR4F5Q8NH21 305 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 OR4F4Q96R69 305 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 TMEM204Q9BSN7 226 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 TMPRSS5Q9H3S3 457 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 HEYLQ9NQ87 328 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 FBLN5Q9UBX5 448 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 WASF3Q9UPY6 502 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 PSG11Q9UQ72 335 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 SEC11BP0C7V7 166 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 RND3P61587 244 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 HIST3H3Q16695 136 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 SELENOHQ8IZQ5 122 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 GPR146Q96CH1 333 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 RAB39BQ96DA2 213 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 GNPNAT1Q96EK6 184 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 OR5B12Q96R08 314 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 CLN8Q9UBY8 286 aa10.4□□□□□ -0.74
CCDC88C-211ENST00000556726 IGLV3-32A0A0A0MS00 114 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 A0A1W2PPE3 182 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 SH2D1BO14796 132 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 DEFA4P12838 97 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 Q3ZCU0 254 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 OR10D4PQ8NGN7 298 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 SLC25A40Q8TBP6 338 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 HPSE2Q8WWQ2 592 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 ABHD14BQ96IU4 210 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 SMIM8Q96KF7 97 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 SMIM7Q9BQ49 75 aa10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 KLF13Q9Y2Y9 288 aaPredicted RBP10.4□□□□□ -0.75
CCDC88C-211ENST00000556726 A0A1W2PPQ1 181 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 PGLYRP1O75594 196 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 DFFBO76075 338 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 PMELP40967 661 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 ZNF766Q5HY98 468 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 FAM53AQ6NSI3 398 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 C10orf35Q96D05 121 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 FER1L6-AS2Q96M78 137 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 OR5H1A6NKK0 313 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 SYNGR2O43760 224 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 LY86O95711 162 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 IFNA1P01562 189 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 CTXN2P0C2S0 81 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 DANCRP0C864 163 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 F2RP25116 425 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 FGF12P61328 243 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 PPP1CBP62140 327 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 CEACAM21Q3KPI0 293 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 H2BFWTQ7Z2G1 175 aa10.39□□□□□ -0.75
CCDC88C-211ENST00000556726 LFNGQ8NES3 379 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms