RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 OR8H3Q8N146 312 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 CCDC107Q8WV48 283 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 LIN7BQ9HAP6 207 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 GFOD1Q9NXC2 390 aa16.6■□□□□ 0.25
CCDC88C-210ENST00000555995 TMEM14DPA8MWL7 114 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 LY6LH3BQJ8 138 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 LPLP06858 475 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 GNG10P50151 68 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 EFNB2P52799 333 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 NKAPLQ5M9Q1 402 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 UBE2UQ5VVX9 321 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 SIGIRRQ6IA17 410 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 TMEM219Q86XT9 240 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 Q8N2B8 174 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 LINC00311Q8N616 119 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 V9GY05 133 aa16.59■□□□□ 0.25
CCDC88C-210ENST00000555995 TRAV1-2A0A0B4J238 106 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 TRAV39A0A0B4J263 110 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 UBE2QL1A1L167 161 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 M0QZK8 103 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 CHATP28329 748 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 SSX1Q16384 188 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 ARSJQ5FYB0 599 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 CD200R1LQ6Q8B3 271 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 CCBE1Q6UXH8 406 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 Q6ZTK2 550 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 OR4K15Q8NH41 348 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 MBNL3Q9NUK0 354 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 GNG12Q9UBI6 72 aa16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 AK6Q9Y3D8 172 aaKnown RBP16.58■□□□□ 0.24
CCDC88C-210ENST00000555995 TRDV1A0A1B0GX56 115 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 C12orf77C9JDV5 145 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 OR2F2O95006 317 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 FAM106CPP0CH98 169 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 PSMB9P28065 219 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 UNC119Q13432 240 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 MOB1BQ7L9L4 216 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 THNSL2Q86YJ6 484 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 SPARTQ8N0X7 666 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 OCSTAMPQ9BR26 566 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 RIMS4Q9H426 269 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 ZNF702PQ9H963 129 aa16.57■□□□□ 0.24
CCDC88C-210ENST00000555995 TXNL1O43396 289 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 PEX14O75381 377 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 HBZP02008 142 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 LOXL3P58215 753 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 QRFPP83859 136 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 ZNF816Q0VGE8 651 aaPredicted RBP16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 HERPUD1Q15011 391 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 P2RY14Q15391 338 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 OR10K2Q6IF99 312 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 ZNF773Q6PK81 442 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 LEAP2Q969E1 77 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 SLC25A33Q9BSK2 321 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 PLEKHJ1Q9NW61 149 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 STEAP1Q9UHE8 339 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 MGAT4AQ9UM21 535 aa16.56■□□□□ 0.24
CCDC88C-210ENST00000555995 HSD17B6O14756 317 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 RGS11O94810 467 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 GAPDHP04406 335 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 JUNBP17275 347 aaPredicted RBP16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 BLVRBP30043 206 aaPredicted RBP16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 STEAP3Q658P3 488 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 KLHDC1Q8N7A1 406 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 MRPL30Q8TCC3 161 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 RBM14Q96PK6 669 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 GFI1Q99684 422 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 TAF9BQ9HBM6 251 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 ABRACLQ9P1F3 81 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 JPT1Q9UK76 154 aa16.55■□□□□ 0.24
CCDC88C-210ENST00000555995 TET2Q6N021 2002 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 A0A1W2PPI3 338 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 IGHV3-7P01780 117 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 C2orf68Q2NKX9 166 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 KCTD21Q4G0X4 260 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 TREML4Q6UXN2 200 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 PRR18Q8N4B5 295 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 OR56B1Q8NGI3 324 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 FAM3DQ96BQ1 224 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 SULT4A1Q9BR01 284 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 NICN1Q9BSH3 213 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 LPAR5Q9H1C0 372 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 CHMP1AQ9HD42 196 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 HSF4Q9ULV5 492 aa16.54■□□□□ 0.24
CCDC88C-210ENST00000555995 RCC1P18754 421 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 RAB3BP20337 219 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 FGF9P31371 208 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 VDAC2P45880 294 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 HTD2P86397 168 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 SRSF4Q08170 494 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 UTF1Q5T230 341 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 SLC25A48Q6ZT89 311 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 C6orf201Q7Z4U5 140 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 FAM89BQ8N5H3 189 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 OR51D1Q8NGF3 324 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 GALMQ96C23 342 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 KCNK15Q9H427 330 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 OR2S2Q9NQN1 319 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 STUB1Q9UNE7 303 aa16.53■□□□□ 0.24
CCDC88C-210ENST00000555995 SIGLEC9Q9Y336 463 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms