RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FAM90A23PA8MXZ1 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 SDCBPO00560 298 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 BPNT1O95861 308 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 HBZP02008 142 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A15PP0C7V4 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A13PP0C7W8 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A14PP0C7W9 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A24PP0C7X0 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 UBBP0CG47 229 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 PSMA1P25786 263 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 REG1BP48304 166 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 EFNB2P52799 333 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 GNMTQ14749 295 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 RAB11BQ15907 218 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 TMEM95Q3KNT9 176 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 C22orf42Q6IC83 251 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 CD200R1LQ6Q8B3 271 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 C11orf44Q8N8P7 122 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 OR10V1Q8NGI7 309 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 OR4C13Q8NGP0 309 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 KCNG3Q8TAE7 436 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 MRPL30Q8TCC3 161 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 NEDD4LQ96PU5 975 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 HDHD3Q9BSH5 251 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 YTHDF1Q9BYJ9 559 aaKnown RBP9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 LPAR5Q9H1C0 372 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 GFOD1Q9NXC2 390 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FBLN5Q9UBX5 448 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 TRDV1A0A1B0GX56 115 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 A0A1W2PPI3 338 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 TIMM23O14925 209 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 ORC5O43913 435 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 ARSBP15848 533 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 BLVRBP30043 206 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 KIR2DS4P43632 304 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF134P52741 427 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 C2orf76Q3KRA6 126 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF773Q6PK81 442 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 SVOPQ8N4V2 548 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 DRAM1Q8N682 238 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 OR10A7Q8NGE5 316 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 OR52L2PQ8NGH6 319 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 OR56B4Q8NH76 319 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 SGMS2Q8NHU3 365 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 TOMM40LQ969M1 308 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 RPEQ96AT9 228 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 FAM3DQ96BQ1 224 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 TM2D1Q9BX74 207 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 NPFFR1Q9GZQ6 430 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 TAF9BQ9HBM6 251 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 V9GY05 133 aa9.27□□□□□ -0.93
CCDC88C-208ENST00000554165 IGHV3-72A0A0B4J1Y9 119 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 FOXI3A8MTJ6 420 aaPredicted RBP9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 CCRL2O00421 344 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 LDLRAD4O15165 306 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 MRPS14O60783 128 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 GLAP06280 429 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 VSIG10L2P0DP72 767 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 SLC2A2P11168 524 aaPredicted RBP9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 CEACAM3P40198 252 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 TMEM50BP56557 158 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 MADCAM1Q13477 382 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 NEDD8Q15843 81 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 CT45A1Q5HYN5 189 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 LIAT1Q6ZQX7 453 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 FAM89BQ8N5H3 189 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 KLHDC1Q8N7A1 406 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 OR10X1Q8NGY0 326 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 CT45A3Q8NHU0 189 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 CAPSLQ8WWF8 208 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 OR51E2Q9H255 320 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 RNF167Q9H6Y7 350 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 RAB18Q9NP72 206 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 SERTAD4Q9NUC0 356 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 MBNL3Q9NUK0 354 aaKnown RBP9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 GNG12Q9UBI6 72 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 AK3Q9UIJ7 227 aa9.26□□□□□ -0.93
CCDC88C-208ENST00000554165 NOTCH1P46531 2555 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 TRAV1-2A0A0B4J238 106 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 TMEM272A0A1B0GTI8 110 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 SPINT2O43291 252 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 AMY1AP04745 511 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 AMY2AP04746 511 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 SNRNP70P08621 437 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 CLEC2LP0C7M8 214 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 BRS3P32247 399 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 PPP1CCP36873 323 aaKnown RBP9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 VEGFCP49767 419 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 HNF4GQ14541 408 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 MOGAT2Q3SYC2 334 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 PLAC9Q5JTB6 97 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 PRR31Q5SQ13 230 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 C6orf183Q5T699 404 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 OR2W3Q7Z3T1 314 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 LYG1Q8N1E2 194 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 Q8N2B8 174 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 ZNF439Q8NDP4 499 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 OR52M1Q8NGK5 317 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 OR2T6Q8NHC8 308 aa9.25□□□□□ -0.93
CCDC88C-208ENST00000554165 CFHR4Q92496 578 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms