RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SDCBPO00560 298 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 RGS11O94810 467 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 CD36P16671 472 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 GADD45AP24522 165 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 BLVRBP30043 206 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 MADCAM1Q13477 382 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 TPTE2P1Q5T6R2 138 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 OR10K2Q6IF99 312 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 C17orf50Q8WW18 174 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 TOMM40LQ969M1 308 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 RPEQ96AT9 228 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 LIN7BQ9HAP6 207 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 C12orf4Q9NQ89 552 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 GFOD1Q9NXC2 390 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 C1RLQ9NZP8 487 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 ABRACLQ9P1F3 81 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 JPT1Q9UK76 154 aa11.63□□□□□ -0.55
CCDC88C-207ENST00000554051 STAB1Q9NY15 2570 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 TRBV6-6A0A0A6YYG2 114 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 UBE2QL1A1L167 161 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 CLPSL1A2RUU4 121 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 C12orf77C9JDV5 145 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 HAX1O00165 279 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 LDLRAD4O15165 306 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 TXNL1O43396 289 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 GDNFP39905 211 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 RAB7AP51149 207 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 MRPS15P82914 257 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 HES5Q5TA89 166 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 STEAP3Q658P3 488 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 SHISA2Q6UWI4 295 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 CROCCP3Q8IVE0 287 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 LINC00311Q8N616 119 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 OR10X1Q8NGY0 326 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 MRPL30Q8TCC3 161 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 CHCHD6Q9BRQ6 235 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 NICN1Q9BSH3 213 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 CHMP1AQ9HD42 196 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 GNG12Q9UBI6 72 aa11.62□□□□□ -0.55
CCDC88C-207ENST00000554051 TSPAN9O75954 239 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 CLDN12P56749 244 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 OR10A3P58181 314 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 HTD2P86397 168 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 C2orf76Q3KRA6 126 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 BRICD5Q6PL45 260 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 C6orf201Q7Z4U5 140 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 OR8H3Q8N146 312 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 OR4K15Q8NH41 348 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 RFESDQ8TAC1 157 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 CCDC107Q8WV48 283 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 CAPSLQ8WWF8 208 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 GALMQ96C23 342 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 SULT4A1Q9BR01 284 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 CENPOQ9BU64 300 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 ZNF747Q9BV97 191 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 KCNK15Q9H427 330 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 C16orf95Q9H693 158 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 PSG11Q9UQ72 335 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 HILPDAQ9Y5L2 63 aa11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 FBN1P35555 2871 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-207ENST00000554051 LOC100506127A0A0U1RQW1 187 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 TMEM272A0A1B0GTI8 110 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 SHISA3A0PJX4 238 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 FAM172BPA6NC97 362 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 TRIM64CA6NLI5 447 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 SERPINE3A8MV23 424 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 NAPSAO96009 420 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 HBZP02008 142 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 JUNBP17275 347 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 HMGN3Q15651 99 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 LTC4SQ16873 150 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 LY6G6FQ5SQ64 297 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 OLFML2AQ68BL7 652 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 SFXN4Q6P4A7 337 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 Q6ZTK2 550 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 RAB3CQ96E17 227 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 OCSTAMPQ9BR26 566 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 TAF9BQ9HBM6 251 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 ETV7Q9Y603 341 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 KIAA2026Q5HYC2 2103 aa11.6□□□□□ -0.55
CCDC88C-207ENST00000554051 A6NDX4 124 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 FOXI3A8MTJ6 420 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 LY6LH3BQJ8 138 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 M0QZK8 103 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 FAM106CPP0CH98 169 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 VEGFCP49767 419 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 GNG10P50151 68 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 LOXL3P58215 753 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 LY6EQ16553 131 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 LDLRAD2Q5SZI1 272 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 BAIAP2L2Q6UXY1 529 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 DYNAPQ8N1N2 210 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 PRR18Q8N4B5 295 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 OR2T6Q8NHC8 308 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 FAAP24Q9BTP7 215 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 OR51E2Q9H255 320 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 OR2S2Q9NQN1 319 aa11.59□□□□□ -0.55
CCDC88C-207ENST00000554051 A0A0A6YYD4 124 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 TRAV39A0A0B4J263 110 aa11.58□□□□□ -0.56
CCDC88C-207ENST00000554051 HSD17B6O14756 317 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms